Detail information of POPTR_0010s07230_circ_ag.1


General Information
CircRNA Name POPTR_0010s07230_circ_ag.1
ID in PlantcircBase pop_circ_002703
Alias Chr10:9026424-9030934
Organism Populus trichocarpa
Position chr10: 8364101-8368611  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues stem xylem
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGACTGCTCAAAGTATGGCCAATGAAAATATCCCGGCAAGGTTGCCCAATTCTCATACCGTG
CAGGACAGCAATACATATGCAGATGAAGGTGATGAGaaagaaaatgtccagcctggagaaagat
cgtcaggatttgcagtcaacaattgatgctctccaagaaggtattcacacgtagtttttgttca
ctgttgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAGAAAATGTCCAGCCTGGAGAAAGATCGTCAGGATTTGCAGTCAACAATTGATGCTCTCCAA
GAAGGTATTCACACGTAGTTTTTGTTCACTGTTGAAGTTCTTATTGCTTTTATATATATGTTTT
TTTTTAATGCTAAAATGAGGTCTAAGAAAAGAGTGGGGAGTGAGGAAATGGGGGGATGATGAAC
TAGATGGATTAGCAAAAGAAATATTTGGTCTATTAAAAACTAAAATAAACATATGCCATGCAAC
TTTGTAATCGTTATGGATGAGAAGTGTTACAATGAGGAAGTCATTTCTCCTAAACCGTTTGATA
TATTATCCACTTGTTAGAAAATTTAGAGAACTAGTTTTATCAATAAAATTATTAAGAAAAGTTT
AGGCATGGAAAAACACTTTAGACATAGATCTATTTGCATTGTTCACTGGAACAGGAACAATGTA
GTGAGATCTTTGCCTTTCACACCCAAAAATATTGAACTAGCTATCAGGGCATTAAGGTCTTTTT
ACAAGCCGTATTAGCCATCACCAAATTGATCGGAGATAAATAAGTTTTTTTCCATTTCAAAAGT
ATAAGCACAGTTTAACGACCCAATGCCCCTGAAAGCAAAATTTTTAAAATTGATGTCCAACGGC
TTTTTTTTATTTTCACATGGGTTTTTCATTGTTATCAGGTCAGCTAAGGGGCGGTTTGCATTTG
ACCATATATATATATATATATATAAAGCATAGTGAAATGACCAAAATAATCTTGAAAGCAAAAA
TTTTAAAACTGGCGCCAAGGGCTTTTCATTATTTTATAATGGTTTTTTTGTTATTATCAGGTCA
ACTGAGGGATAATTTGTTATTTGACTAAATATAAAAAATAAAAAGTGGGCAGGATAATTCAGGT
TGTCTCGACCCTGATTATCGGGGTTATAAGTTTGGCATGCTAACTTGACTTGACCAAACCTTTT
TTTTTAGGTTATTTTTGTACCCCATTTCATCCTTTCATATTTAATGAGTTGAGAATTAAGCTAT
ATAATTTGTCTCATTTTGAAAAAAATATTTTTTTTTCCAAGTTATCATGATCATTTTTTTTAAA
TGTCCTTTTTGCTGTAGTTGCCTTTTTTTTTATCGTCTGATTTAAATAAAACTAACTTATTTGA
TTAATCAGATCTATGACCCAAGTCGCGAATTTTTCTTCCCTTTTCAAAACGCGATCGTGGCACT
TGAATATCATTTTTTACACAACAAAAAAAAAAGGTCTGGTCCAAACTTAGTTAAATTTAATCAG
GAAAGGTGTCAAAGGAGGGACACCACTGTAGATCCTCCTATGTTTGCGTTCAAGAATGAAACCT
AATAAGAAAGAAATTCATCACATACTGTGTACTTCAACTGGTAGTTCTCTTTAAAAAGTTTCAA
AATAAAAACTTCCTGACTTAACAGAGTGTGTGTGCATTGCTTCGAGAAGCAAAATCAAGAAGTC
TGCTAAAACTTCCTCAAACTACTTTGAGAGGACCTTTATATCATTAATAAGAAGTACAGTTGAT
TGGTTGATTGGTTTGTTCTGTTCTTCAGTTTGTCATTGTCCTCTTTAAAAAACTCAGATGAGTA
CCATTTATAAAAGAGACAGGTTGAAGAGAGTTTTGCAAACAGCTTGCAGTATTCATTTCCAAGC
ATAACCCATCCTTCCAGCCGATAAATGAAAGATTTGCTAACAACAAGCTTTCTTTGTCTTGATA
TTTTATGATGCTGATGAAAGCATATTTACTTCATGGGAGTCTCGTAATCATCTCCATATTGATT
ATGGAGATACAACATTTCTTAAAACTGCTATAGGATTGGGCTTTTTGAAGTTCAAGAACTCGTA
TAACTGTTAACCCAGTATGGTCCCCATAATTATTTTGCATGATTCCAGAATATACTTATTATAA
TTTCTTTTTTAAGGCCATGTTTCAGATCAATTGATTTTTTTTTCAGTTCTGTTAAGTATTTCCA
TCAATGAGTGATTTTATTTGTCGGTGAAAAATGAAATGATTAATTATCTCACATATATTGTATA
TGCTTTTAATGTTTCTACCTAACTAATCATCATTTTTATGACACAGAGAAGAAACTATTGCAAT
CCAAGCTACGTAAAGCTTCTGTAACTGAAAAGTCCCCAGGTGTAAGCAGGAGTGCTGAGAAAAA
AAATGTAGCAACATCGACAGAAGATCTAGGTAATGATAGTTCTCTTGGAATTGATGTTATGCTG
TTCAAAATGTTACTGCATAGTGGATGCTGTAAGCTGTGTCTTCACTTAAACAAGGGGGGGGGGG
GGTTTCGTCTTCCAAAATGGGTCATATTTGTTGGAAATGATGATTGAGCTTTTTTGGTGGTTCA
GTCTTTGAGCCTTTTGTTCTGTTAAGGAACTTCAGGAATTCGTTGGAAATGCTGCTGCTGCTTC
CATGTTTCTTCTCACATTTGAATGCTTTGATAGACTCTATAGAGACAAAAATTCAGACACTTTA
TTGGTGTGCTTTTTTGTTAACATTTTGACTGCTTCCTTGAGACCTATTGATCTCCCGTGTCCTT
TTTGAAACTGTTGCTGTTGGGGGGGGGGGGGGTTGTTAGCTTAAATAGAAAAACAATATGGAAT
TGGATCAAGATTTAGCTTCATTGGTTGATGGCAAAACATTTTTTTTGTTTCTAATTATCGAATT
CTGGGATAGGATAGCTTTGACATCTTATAGATGTGGGGGATTATCTATTTGTTCTTGTTTTCAT
CAACATTTTATTCTGGACGAGTATGTTTGAGCTTCAATTTTTGTGTTGGGCATTGGTTTCTTGG
TGTATACTATTTTCCCTTTTTCCTGTAAAACCATTGTACAACCTCAGATAATATTCACTCTGGT
TACTGCCGTACTGCAATGAATCATTTTGCAATTTGTTCTTCGAAGTCTTTTCCTTTTCCCATTA
TTCATGGTTTTCTTCTTCATTTCAATTGCAGATGACATCCCAGTGACTTCCAGCCAGGAAACAC
ATGGTACTTCGTCTGTTCCTAGAAGTGATGCTACTGATTTTCCCATGCTACCTGAAAATGGTCA
GTCAAATCTTGAAGCTTCATCTGTGTACATTCCATCAGATCAAATGAGAATGATTCAAAACATT
AACACAATACTTTCCGAGGTATGTTTTTTATATACTGTCAATTCTTTGCAAGCCTAAGCGCTCT
AGGCATTTGAGAAAATTTTCCCCTTCTTTTCTGTTAAATAATGAAATAATTTATGAAGTGACTG
AAGTAGAATACATAAATGTAAAGTCAACAATATCCCTTTTGTGGCGCAGCTCGCATTGGAAAAA
GAAGAGTTGATGCATGCTTTGACATCTGAGTCATCTCAGTGCTCCAAGCTAAAGGTAACCTCTA
GCCTGAAATGAACAATGGAGTTAGCAATCATATGTGAAGTGATTTTGTTGGATGCGAACCTCTT
AGGGAAGCAGCCTGTGAAAGGATTATAACTATATTGAATCTCGAGAAAAGAGGGGAAGGTCTCA
GTCAATTCTTGTTTATGTATAGAAGCAGCTGATTCTAGTGTACTTTTCGATTGTGCTTGTGTCA
GAATCTTACGGTTTATGGTGCATGGTACCATTTCTTTCCATTGATCTCTTTGAGGTTCAGATGA
ATAGGGATTAAATGCTCGGCGAGGGTTTGGTTTCTGTACAGACAAAAAGATATATGGGGTGTAT
ACTTTAGTAAGATTTTGGATTTTGATGAAAGGAGCAAAACAAAGAGCTTTTAAGGGGGTACAGT
CTGCTCGTAGCTGTTTGAAAGATTTTTGGATTAAAACTTCTCATTTTTGCTTATTACACAGCCA
TTCCTCTTCTTCTTTTTTTTTGCTCTGAATAGTTCATGTTATAGATCATAAATTTTGCATAATA
TGTTGTCAATGCACTCATTTTTTTTCTTGTACATAGGTGGTTCCTCCTACTTTATTTTGATGTT
TAAACTTATTTCTAGAAATAAGATTTTGAAAAACTGTATTTAATAGGACAAACAACTGTGAAGA
TCTGCTTGCTTTCCATCATACTAGAATGTGTGGAGAGTATTGTTTTACTACAGGTGGTATACTT
AAGTTGTTTCTAGTGTATTTTACACGTTCTTAGAATCAATGTGTCTCCCTAGATCAGGAAATGG
TTATGGATTAGAAATTGACGAGGTTGGGGAGTGTTATTCTAGTGATCTAGTCTAAGTTGAATTT
TTTTTTTCCTGAATAATCAAATGTTTTATACTATTGATTAATTTTCTATTTCTGTATGCTGACG
TGTATTCAATATGTTCATCTAGTTTTCTTATATAATATTTTGGGATTTTTGTTTCAAATAAATG
AAGGATTTGAACAATGAATTGTCGCGTAAACTTGAGGTTCAAACTCAAAGATTAGAGCTTTTGA
CTGCTCAAAGTATGGCCAATGAAAATATCCCGGCAAGGTTGCCCAATTCTCATACCGTGCAGGA
CAGCAATACATATGCAGATGAAGGTGATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.096241565
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021