Plant Circular RNA Database

Detail information of AT1G35530_circ_g.3

			
						 General Information
					
						CircRNA Name
						AT1G35530_circ_g.3
					
						ID in PlantcircBase
						ath_circ_005733
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 13091316-13094765  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder
					
						Parent gene
						
							AT1G35530						
					
						Parent gene annotation
						
							DEAD/DEAH box RNA helicase family protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G35530_circ_g.2 AT1G35530_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						inflorescences
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G35530.1:12
AT1G35530.4:13
AT1G35530.5:13
AT1G35530.3:13
AT1G35530.2:13

General Information
CircRNA Name	AT1G35530_circ_g.3
ID in PlantcircBase	ath_circ_005733
Alias	NA
Organism	Arabidpsis thaliana
Position	chr1: 13091316-13094765 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene	AT1G35530
Parent gene annotation	DEAD/DEAH box RNA helicase family protein
Parent gene strand	+
Alternative splicing	AT1G35530_circ_g.2 AT1G35530_circ_g.4
Support reads	1
Tissues	inflorescences
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G35530.1:12 AT1G35530.4:13 AT1G35530.5:13 AT1G35530.3:13 AT1G35530.2:13

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCATCGGATGAAGATGACTGTGAGGGATTGGAGCTTAGTCCACGGCTCACTAACTTCATCAAGA
GCGGCATTGTTCCAGAGTCACCTGTCTATGACCAAGttgatggcggtaccgatacagctgagaa
tactggctcttactgcaactcctggatgtaagtgattgactttcttcttcttgggggttattat
atttctgc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1924
Transcript exons: 13091316-13091370,13091444-13091565,13091649-13091762,13
091849-13092042,13092153-13092283,13092379-13092439,1309
2526-13092596,13092681-13092730,13092820-13092981,130933
28-13093663,13093752-13093818,13094205-13094765
TTGATGGCGGTACCGATACAGCTGAGAATACTGGCTCTTACTGCAACTCCTGGATCAAAGACAC
AGGCCATCCAGGGTATCATTGATAATTTGCAGATATCCACACTTGAATATCGAAATGAGAGTGA
CCATGATGTTTGCCCTTATGTCCACGACAGAAAATTAGAAGTCATCGAGGTTCCCTTGGGTCAA
GATGCAGATGATGTATCGAAACGCCTGTTTCATGTTATACGTCCATATGCAGTCAGGCTTAAAA
ACTTTGGGGTTAATCTAAATAGAGATATACAAACTTTAAGTCCACACGAAGTACTTATGGCAAG
GGATAAGTTTCGTCAAGCACCTCTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCT
TGCTTTGCAGCTCTTATCACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGAC
CAGCGTATGAGATGCTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAA
TGAAGATATTAGGATGACGAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCA
AAATTGTCGAAGATGTTAGAAATACTGGTTGATCATTTCAAAGTGAAAGATCCGAAGACATCAC
GGGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAATAT
TGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGTAAGACATTGAAAGGCCAG
TCGCAAAAAATTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAATGTTATTGTCG
CAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGTTATATGTTTTGATGC
TAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGGAAGGAAAAATAATGGTCGA
ATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTCGTTCCAC
GTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGACTCCAGCTTTCCAGAAAAAGCTTACACC
TGCAGAGACGCATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAGTTGAGAGTGTCC
TTAATTGCGTTCCCTCACTTCCAGACATTGCCATCCAAGGTGCACAAAGTAATGCATTCACGTC
AAACAGGCATGTTAATTGACGCTATGCAGCACTTGCAAGAGCCAACTTTTTCAGAACAGAGTAA
AAGCTTCTTCACTGAGTTTCGAGCTCCTTTGGGTGAAAGAGAAGAGCTTGATACAGGTCTGAGG
GTTACTAATGATCCAAAAGATCTACACTCTGTCCGTGATTTGGAAGTCAACACATCACAGAGAA
AGGCAAAACAAGTTGAATCTCCCACAAGCACCTTAGAGACAACAGAGAAGGATTACGAAGAATC
TTCACCCACACACCGTTATCTTTTCAGTTCAGAATGTGCATCCGTTGATACTCTGGGGAACGTC
TTCGTAATGCCAGTTCCTCTTTTATTCTTTCCTAATGTTCTGGAGTCAGACAATACGCCTCTGC
CTAAAACAGAAAAACAACATTCTTGCCGGAATACATCTCACATTGACTTAGTTCCAGTAGATAC
TTCGGAAAAACATCGGCAAGATAATATCTCATGCAAGTTAAAGGAAAGATTCTCGCCAGACGGT
GCCAGCGAGACACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGTGAAGATG
ATGTAGCGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGGGATTGGA
GCTTAGTCCACGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGTCTATGAC
CAAG
Transcript length: 2056
Transcript exons: 13091316-13091370,13091444-13091565,13091649-13091762,13
091849-13092042,13092153-13092283,13092379-13092439,1309
2526-13092596,13092681-13092730,13092820-13092985,130931
01-13093228,13093328-13093663,13093752-13093818,13094205
-13094765
TTGATGGCGGTACCGATACAGCTGAGAATACTGGCTCTTACTGCAACTCCTGGATCAAAGACAC
AGGCCATCCAGGGTATCATTGATAATTTGCAGATATCCACACTTGAATATCGAAATGAGAGTGA
CCATGATGTTTGCCCTTATGTCCACGACAGAAAATTAGAAGTCATCGAGGTTCCCTTGGGTCAA
GATGCAGATGATGTATCGAAACGCCTGTTTCATGTTATACGTCCATATGCAGTCAGGCTTAAAA
ACTTTGGGGTTAATCTAAATAGAGATATACAAACTTTAAGTCCACACGAAGTACTTATGGCAAG
GGATAAGTTTCGTCAAGCACCTCTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCT
TGCTTTGCAGCTCTTATCACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGAC
CAGCGTATGAGATGCTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAA
TGAAGATATTAGGATGACGAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCA
AAATTGTCGAAGATGTTAGAAATACTGGTTGATCATTTCAAAGTGAAAGATCCGAAGACATCAC
GGGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAATAT
TGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGTAAGACATTGAAAGGCCAG
TCGCAAAAAATTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAATGTTATTGTCG
CAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGTTATATGTTTTGATGC
TAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGGAAGGAAAAATAATGGTCGA
GTTGTAGTTCTTGCTTGTGAAGGATCAGAAAAGAACAGCTATATGCGAAAGCAAGCAAGTGGAC
GGGCTATTAAAAAACACATGCGGAATGGAGGAACAAATAGTTTTAATTTTCATCCTAGTCCAAG
GATGATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTCGTT
CCACGTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGACTCCAGCTTTCCAGAAAAAGCTTA
CACCTGCAGAGACGCATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAGTTGAGAGT
GTCCTTAATTGCGTTCCCTCACTTCCAGACATTGCCATCCAAGGTGCACAAAGTAATGCATTCA
CGTCAAACAGGCATGTTAATTGACGCTATGCAGCACTTGCAAGAGCCAACTTTTTCAGAACAGA
GTAAAAGCTTCTTCACTGAGTTTCGAGCTCCTTTGGGTGAAAGAGAAGAGCTTGATACAGGTCT
GAGGGTTACTAATGATCCAAAAGATCTACACTCTGTCCGTGATTTGGAAGTCAACACATCACAG
AGAAAGGCAAAACAAGTTGAATCTCCCACAAGCACCTTAGAGACAACAGAGAAGGATTACGAAG
AATCTTCACCCACACACCGTTATCTTTTCAGTTCAGAATGTGCATCCGTTGATACTCTGGGGAA
CGTCTTCGTAATGCCAGTTCCTCTTTTATTCTTTCCTAATGTTCTGGAGTCAGACAATACGCCT
CTGCCTAAAACAGAAAAACAACATTCTTGCCGGAATACATCTCACATTGACTTAGTTCCAGTAG
ATACTTCGGAAAAACATCGGCAAGATAATATCTCATGCAAGTTAAAGGAAAGATTCTCGCCAGA
CGGTGCCAGCGAGACACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGTGAA
GATGATGTAGCGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGGGAT
TGGAGCTTAGTCCACGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGTCTA
TGACCAAG
Transcript length: 2059
Transcript exons: 13091316-13091370,13091444-13091565,13091649-13091762,13
091849-13092042,13092153-13092283,13092379-13092439,1309
2526-13092596,13092681-13092730,13092820-13092981,130930
94-13093228,13093328-13093663,13093752-13093818,13094205
-13094765
TTGATGGCGGTACCGATACAGCTGAGAATACTGGCTCTTACTGCAACTCCTGGATCAAAGACAC
AGGCCATCCAGGGTATCATTGATAATTTGCAGATATCCACACTTGAATATCGAAATGAGAGTGA
CCATGATGTTTGCCCTTATGTCCACGACAGAAAATTAGAAGTCATCGAGGTTCCCTTGGGTCAA
GATGCAGATGATGTATCGAAACGCCTGTTTCATGTTATACGTCCATATGCAGTCAGGCTTAAAA
ACTTTGGGGTTAATCTAAATAGAGATATACAAACTTTAAGTCCACACGAAGTACTTATGGCAAG
GGATAAGTTTCGTCAAGCACCTCTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCT
TGCTTTGCAGCTCTTATCACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGAC
CAGCGTATGAGATGCTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAA
TGAAGATATTAGGATGACGAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCA
AAATTGTCGAAGATGTTAGAAATACTGGTTGATCATTTCAAAGTGAAAGATCCGAAGACATCAC
GGGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAATAT
TGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGTAAGACATTGAAAGGCCAG
TCGCAAAAAATTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAATGTTATTGTCG
CAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGTTATATGTTTTGATGC
TAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGGAAGGAAAAATAATGGTCGA
CCTTTACTAGTTCTTGCTTGTGAAGGATCAGAAAAGAACAGCTATATGCGAAAGCAAGCAAGTG
GACGGGCTATTAAAAAACACATGCGGAATGGAGGAACAAATAGTTTTAATTTTCATCCTAGTCC
AAGGATGATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTC
GTTCCACGTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGACTCCAGCTTTCCAGAAAAAGC
TTACACCTGCAGAGACGCATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAGTTGAG
AGTGTCCTTAATTGCGTTCCCTCACTTCCAGACATTGCCATCCAAGGTGCACAAAGTAATGCAT
TCACGTCAAACAGGCATGTTAATTGACGCTATGCAGCACTTGCAAGAGCCAACTTTTTCAGAAC
AGAGTAAAAGCTTCTTCACTGAGTTTCGAGCTCCTTTGGGTGAAAGAGAAGAGCTTGATACAGG
TCTGAGGGTTACTAATGATCCAAAAGATCTACACTCTGTCCGTGATTTGGAAGTCAACACATCA
CAGAGAAAGGCAAAACAAGTTGAATCTCCCACAAGCACCTTAGAGACAACAGAGAAGGATTACG
AAGAATCTTCACCCACACACCGTTATCTTTTCAGTTCAGAATGTGCATCCGTTGATACTCTGGG
GAACGTCTTCGTAATGCCAGTTCCTCTTTTATTCTTTCCTAATGTTCTGGAGTCAGACAATACG
CCTCTGCCTAAAACAGAAAAACAACATTCTTGCCGGAATACATCTCACATTGACTTAGTTCCAG
TAGATACTTCGGAAAAACATCGGCAAGATAATATCTCATGCAAGTTAAAGGAAAGATTCTCGCC
AGACGGTGCCAGCGAGACACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGT
GAAGATGATGTAGCGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGG
GATTGGAGCTTAGTCCACGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGT
CTATGACCAAG
						
					

						Genomic sequence
						
							TTGATGGCGGTACCGATACAGCTGAGAATACTGGCTCTTACTGCAACTCCTGGATGTAAGTGAT
TGACTTTCTTCTTCTTGGGGGTTATTATATTTCTGCACCCATTAACGGTAGATGTTACTTTCAG
CAAAGACACAGGCCATCCAGGGTATCATTGATAATTTGCAGATATCCACACTTGAATATCGAAA
TGAGAGTGACCATGATGTTTGCCCTTATGTCCACGACAGAAAATTAGAAGTCATCGAGGTTCAA
GCTGGTTTCTGCATTTTCCATTTGTGTTCCTTTCCAAATTGATGTCTAATAATTTTAGTATCTT
TCTGGCAGAGCAGGTTCCCTTGGGTCAAGATGCAGATGATGTATCGAAACGCCTGTTTCATGTT
ATACGTCCATATGCAGTCAGGCTTAAAAACTTTGGGGTTAATCTAAATAGAGATATACAAACTG
TATGTGCCTCAATGCTTATATCTTCACCAATAGCGTCAATGCTCACATTTTCTTATCTATGCAA
ACATCAACTCATGTTTGACAGTTAAGTCCACACGAAGTACTTATGGCAAGGGATAAGTTTCGTC
AAGCACCTCTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCTTGCTTTGCAGCTCT
TATCACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGACCAGCGTATGAGATG
CTAGAAGAGAAATTGAAAGAAGGGTATGCTCTTACTTTCTTCTGTTGAACTGATTTTTGGGATG
GCTTCAGTGGTTTTAGGTATAATAGCTTTTGATATCAAGAGCATCGCCTAAAACTATCACCCTT
TGCAGGCCATTTGCTAGGTTGATGAGTAAGAATGAAGATATTAGGATGACGAAGCTTTTGATGC
AGCAAAGGTTGTCACATGGAGCACCAAGCCCAAAATTGTCGAAGATGTTAGAAATACTGGTTGA
TCATTTCAGTATGTTTTCTTTTTGAATTTTGATCTGGAGTTGATGTTAGTACTCAGCTGGTTTT
ACAACTGAACATTGATATGATCTTATTCTATGGCTGCAGAAGTGAAAGATCCGAAGACATCACG
GGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGGTCAGTATAATTGTTGTTTGTTTTCCCT
TGTTTAGTTGCTCATCATATTTCTTCGTTAGCATTCATCCGATTACGTTACTCTTCAGAGACAT
AATGAACGCATTAAGTAATATTGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCA
GGTTTGTTACTCTGATTTTTTCATCTGAAATTTCCAGTTACACATAAGTATCATTTATAATTGT
TACAATATATGTTTCGTGCAGGTAAGACATTGAAAGGCCAGTCGCAAAAAATTCAGCAGGCTGT
TTTGGAGGTATGTCTGTTTCCCTGTATCTGATTTGAACTTTGGTTTTTTTTTTTTTTTTTACAT
TCTCTTGTATGATAAACTCATCTTTCCAACAGAAATTTAGAGCTGGGGGGTTCAATGTTATTGT
CGCAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGTTATATGTTTTGAT
GCTAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGGAAGGAAAAATAATGGTC
GAGTTGATATCCTTTAGCTAGCTTGATTTCCATTACAAATCTTTGAAGTTACACTTTTTCATTG
GAACGCTATATGCGACGTCTTTGAAGTTACACTTTCCATTCCTTGACTAGCCTTTACTAGTTCT
TGCTTGTGAAGGATCAGAAAAGAACAGCTATATGCGAAAGCAAGCAAGTGGACGGGCTATTAAA
AAACACATGCGGAATGGAGGAACAAATAGTTTTAATTTTCATCCTAGTCCAAGGATGGTAAGAG
CTTTTCTTTTTTGATAATTTGTTTTCCTTACCTTGTTGCTTCAGTTTTCAACTTCTCTTAACTT
CAGATATCTCTGTCATGTGTTATTATAGATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTT
GAGTTTTCAATCAAGCAATTCGTTCCACGTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGA
CTCCAGCTTTCCAGAAAAAGCTTACACCTGCAGAGACGCATATGCTCGCTAAGTATTACAACAA
CCCCGATGAGGAAAAGTTGAGAGTGTCCTTAATTGCGTTCCCTCACTTCCAGACATTGCCATCC
AAGGTGCACAAAGTAATGCATTCACGTCAAACAGGCATGTTAATTGACGCTATGCAGCACTTGC
AAGAGCCAACTTTTTCAGAACAGAGTAAAAGCTTCTTCACTGAGGTGTGGTTCAAAATCCTGGT
AAACTTTTGTTTTTCCTTGCTTTCTGTGAATTCATTTTTCACTTACGTGGAATCACTTACTTTA
ATAGTTTCGAGCTCCTTTGGGTGAAAGAGAAGAGCTTGATACAGGTCTGAGGGTTACTAATGAT
CCAAAAGGTAAATATAGTCTCATTGATCTTGCCGAAGTATCAATTCTTAAAGTCGCATGGATAT
ATATTCATTCCTAAACCAGCTCGTAGGAGGTCTGTATGCTTATAAGCTATCAGCTAGTCGGAGG
TCTATAGGCTATAAGCTATTGAACAATGACCAAAAAGCCTATTTTAGGATATACTATCTGCTCT
TTTTAGGTATTTTATATAGCTTCATGTCACTTCTCATCAACCCAAATGAAATTGCCAATAATTT
ATAGGAAAGATGCTTATAGACTTTGATCAGATAGCTTATTGTCTGGTCAATAATGTATCTTTGC
ATTGCATATATATGAAAATCAGGCCTTTCGTTGTAGTGTTGAAACACATCCATTCTATTGTATT
AATGTGCAGATCTACACTCTGTCCGTGATTTGGAAGTCAACACATCACAGAGAAAGGCAAAACA
AGTTGAATCTCCCACAAGCACCTTAGAGACAACAGAGAAGGATTACGAAGAATCTTCACCCACA
CACCGTTATCTTTTCAGTTCAGAATGTGCATCCGTTGATACTCTGGGGAACGTCTTCGTAATGC
CAGTTCCTCTTTTATTCTTTCCTAATGTTCTGGAGTCAGACAATACGCCTCTGCCTAAAACAGA
AAAACAACATTCTTGCCGGAATACATCTCACATTGACTTAGTTCCAGTAGATACTTCGGAAAAA
CATCGGCAAGATAATATCTCATGCAAGTTAAAGGAAAGATTCTCGCCAGACGGTGCCAGCGAGA
CACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGTGAAGATGATGTAGCGAA
TTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGGGATTGGAGCTTAGTCCA
CGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGTCTATGACCAAG
						
					

			
		

Sequences
Splice junction sequence	TCATCGGATGAAGATGACTGTGAGGGATTGGAGCTTAGTCCACGGCTCACTAACTTCATCAAGA GCGGCATTGTTCCAGAGTCACCTGTCTATGACCAAGttgatggcggtaccgatacagctgagaa tactggctcttactgcaactcctggatgtaagtgattgactttcttcttcttgggggttattat atttctgc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1924 Transcript exons: 13091316-13091370,13091444-13091565,13091649-13091762,13 091849-13092042,13092153-13092283,13092379-13092439,1309 2526-13092596,13092681-13092730,13092820-13092981,130933 28-13093663,13093752-13093818,13094205-13094765 TTGATGGCGGTACCGATACAGCTGAGAATACTGGCTCTTACTGCAACTCCTGGATCAAAGACAC AGGCCATCCAGGGTATCATTGATAATTTGCAGATATCCACACTTGAATATCGAAATGAGAGTGA CCATGATGTTTGCCCTTATGTCCACGACAGAAAATTAGAAGTCATCGAGGTTCCCTTGGGTCAA GATGCAGATGATGTATCGAAACGCCTGTTTCATGTTATACGTCCATATGCAGTCAGGCTTAAAA ACTTTGGGGTTAATCTAAATAGAGATATACAAACTTTAAGTCCACACGAAGTACTTATGGCAAG GGATAAGTTTCGTCAAGCACCTCTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCT TGCTTTGCAGCTCTTATCACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGAC CAGCGTATGAGATGCTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAA TGAAGATATTAGGATGACGAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCA AAATTGTCGAAGATGTTAGAAATACTGGTTGATCATTTCAAAGTGAAAGATCCGAAGACATCAC GGGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAATAT TGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGTAAGACATTGAAAGGCCAG TCGCAAAAAATTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAATGTTATTGTCG CAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGTTATATGTTTTGATGC TAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGGAAGGAAAAATAATGGTCGA ATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTCGTTCCAC GTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGACTCCAGCTTTCCAGAAAAAGCTTACACC TGCAGAGACGCATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAGTTGAGAGTGTCC TTAATTGCGTTCCCTCACTTCCAGACATTGCCATCCAAGGTGCACAAAGTAATGCATTCACGTC AAACAGGCATGTTAATTGACGCTATGCAGCACTTGCAAGAGCCAACTTTTTCAGAACAGAGTAA AAGCTTCTTCACTGAGTTTCGAGCTCCTTTGGGTGAAAGAGAAGAGCTTGATACAGGTCTGAGG GTTACTAATGATCCAAAAGATCTACACTCTGTCCGTGATTTGGAAGTCAACACATCACAGAGAA AGGCAAAACAAGTTGAATCTCCCACAAGCACCTTAGAGACAACAGAGAAGGATTACGAAGAATC TTCACCCACACACCGTTATCTTTTCAGTTCAGAATGTGCATCCGTTGATACTCTGGGGAACGTC TTCGTAATGCCAGTTCCTCTTTTATTCTTTCCTAATGTTCTGGAGTCAGACAATACGCCTCTGC CTAAAACAGAAAAACAACATTCTTGCCGGAATACATCTCACATTGACTTAGTTCCAGTAGATAC TTCGGAAAAACATCGGCAAGATAATATCTCATGCAAGTTAAAGGAAAGATTCTCGCCAGACGGT GCCAGCGAGACACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGTGAAGATG ATGTAGCGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGGGATTGGA GCTTAGTCCACGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGTCTATGAC CAAG Transcript length: 2056 Transcript exons: 13091316-13091370,13091444-13091565,13091649-13091762,13 091849-13092042,13092153-13092283,13092379-13092439,1309 2526-13092596,13092681-13092730,13092820-13092985,130931 01-13093228,13093328-13093663,13093752-13093818,13094205 -13094765 TTGATGGCGGTACCGATACAGCTGAGAATACTGGCTCTTACTGCAACTCCTGGATCAAAGACAC AGGCCATCCAGGGTATCATTGATAATTTGCAGATATCCACACTTGAATATCGAAATGAGAGTGA CCATGATGTTTGCCCTTATGTCCACGACAGAAAATTAGAAGTCATCGAGGTTCCCTTGGGTCAA GATGCAGATGATGTATCGAAACGCCTGTTTCATGTTATACGTCCATATGCAGTCAGGCTTAAAA ACTTTGGGGTTAATCTAAATAGAGATATACAAACTTTAAGTCCACACGAAGTACTTATGGCAAG GGATAAGTTTCGTCAAGCACCTCTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCT TGCTTTGCAGCTCTTATCACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGAC CAGCGTATGAGATGCTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAA TGAAGATATTAGGATGACGAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCA AAATTGTCGAAGATGTTAGAAATACTGGTTGATCATTTCAAAGTGAAAGATCCGAAGACATCAC GGGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAATAT TGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGTAAGACATTGAAAGGCCAG TCGCAAAAAATTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAATGTTATTGTCG CAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGTTATATGTTTTGATGC TAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGGAAGGAAAAATAATGGTCGA GTTGTAGTTCTTGCTTGTGAAGGATCAGAAAAGAACAGCTATATGCGAAAGCAAGCAAGTGGAC GGGCTATTAAAAAACACATGCGGAATGGAGGAACAAATAGTTTTAATTTTCATCCTAGTCCAAG GATGATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTCGTT CCACGTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGACTCCAGCTTTCCAGAAAAAGCTTA CACCTGCAGAGACGCATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAGTTGAGAGT GTCCTTAATTGCGTTCCCTCACTTCCAGACATTGCCATCCAAGGTGCACAAAGTAATGCATTCA CGTCAAACAGGCATGTTAATTGACGCTATGCAGCACTTGCAAGAGCCAACTTTTTCAGAACAGA GTAAAAGCTTCTTCACTGAGTTTCGAGCTCCTTTGGGTGAAAGAGAAGAGCTTGATACAGGTCT GAGGGTTACTAATGATCCAAAAGATCTACACTCTGTCCGTGATTTGGAAGTCAACACATCACAG AGAAAGGCAAAACAAGTTGAATCTCCCACAAGCACCTTAGAGACAACAGAGAAGGATTACGAAG AATCTTCACCCACACACCGTTATCTTTTCAGTTCAGAATGTGCATCCGTTGATACTCTGGGGAA CGTCTTCGTAATGCCAGTTCCTCTTTTATTCTTTCCTAATGTTCTGGAGTCAGACAATACGCCT CTGCCTAAAACAGAAAAACAACATTCTTGCCGGAATACATCTCACATTGACTTAGTTCCAGTAG ATACTTCGGAAAAACATCGGCAAGATAATATCTCATGCAAGTTAAAGGAAAGATTCTCGCCAGA CGGTGCCAGCGAGACACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGTGAA GATGATGTAGCGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGGGAT TGGAGCTTAGTCCACGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGTCTA TGACCAAG Transcript length: 2059 Transcript exons: 13091316-13091370,13091444-13091565,13091649-13091762,13 091849-13092042,13092153-13092283,13092379-13092439,1309 2526-13092596,13092681-13092730,13092820-13092981,130930 94-13093228,13093328-13093663,13093752-13093818,13094205 -13094765 TTGATGGCGGTACCGATACAGCTGAGAATACTGGCTCTTACTGCAACTCCTGGATCAAAGACAC AGGCCATCCAGGGTATCATTGATAATTTGCAGATATCCACACTTGAATATCGAAATGAGAGTGA CCATGATGTTTGCCCTTATGTCCACGACAGAAAATTAGAAGTCATCGAGGTTCCCTTGGGTCAA GATGCAGATGATGTATCGAAACGCCTGTTTCATGTTATACGTCCATATGCAGTCAGGCTTAAAA ACTTTGGGGTTAATCTAAATAGAGATATACAAACTTTAAGTCCACACGAAGTACTTATGGCAAG GGATAAGTTTCGTCAAGCACCTCTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCT TGCTTTGCAGCTCTTATCACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGAC CAGCGTATGAGATGCTAGAAGAGAAATTGAAAGAAGGGCCATTTGCTAGGTTGATGAGTAAGAA TGAAGATATTAGGATGACGAAGCTTTTGATGCAGCAAAGGTTGTCACATGGAGCACCAAGCCCA AAATTGTCGAAGATGTTAGAAATACTGGTTGATCATTTCAAAGTGAAAGATCCGAAGACATCAC GGGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGAGACATAATGAACGCATTAAGTAATAT TGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCAGGTAAGACATTGAAAGGCCAG TCGCAAAAAATTCAGCAGGCTGTTTTGGAGAAATTTAGAGCTGGGGGGTTCAATGTTATTGTCG CAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGTTATATGTTTTGATGC TAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGGAAGGAAAAATAATGGTCGA CCTTTACTAGTTCTTGCTTGTGAAGGATCAGAAAAGAACAGCTATATGCGAAAGCAAGCAAGTG GACGGGCTATTAAAAAACACATGCGGAATGGAGGAACAAATAGTTTTAATTTTCATCCTAGTCC AAGGATGATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTTGAGTTTTCAATCAAGCAATTC GTTCCACGTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGACTCCAGCTTTCCAGAAAAAGC TTACACCTGCAGAGACGCATATGCTCGCTAAGTATTACAACAACCCCGATGAGGAAAAGTTGAG AGTGTCCTTAATTGCGTTCCCTCACTTCCAGACATTGCCATCCAAGGTGCACAAAGTAATGCAT TCACGTCAAACAGGCATGTTAATTGACGCTATGCAGCACTTGCAAGAGCCAACTTTTTCAGAAC AGAGTAAAAGCTTCTTCACTGAGTTTCGAGCTCCTTTGGGTGAAAGAGAAGAGCTTGATACAGG TCTGAGGGTTACTAATGATCCAAAAGATCTACACTCTGTCCGTGATTTGGAAGTCAACACATCA CAGAGAAAGGCAAAACAAGTTGAATCTCCCACAAGCACCTTAGAGACAACAGAGAAGGATTACG AAGAATCTTCACCCACACACCGTTATCTTTTCAGTTCAGAATGTGCATCCGTTGATACTCTGGG GAACGTCTTCGTAATGCCAGTTCCTCTTTTATTCTTTCCTAATGTTCTGGAGTCAGACAATACG CCTCTGCCTAAAACAGAAAAACAACATTCTTGCCGGAATACATCTCACATTGACTTAGTTCCAG TAGATACTTCGGAAAAACATCGGCAAGATAATATCTCATGCAAGTTAAAGGAAAGATTCTCGCC AGACGGTGCCAGCGAGACACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGT GAAGATGATGTAGCGAATTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGG GATTGGAGCTTAGTCCACGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGT CTATGACCAAG
Genomic sequence	TTGATGGCGGTACCGATACAGCTGAGAATACTGGCTCTTACTGCAACTCCTGGATGTAAGTGAT TGACTTTCTTCTTCTTGGGGGTTATTATATTTCTGCACCCATTAACGGTAGATGTTACTTTCAG CAAAGACACAGGCCATCCAGGGTATCATTGATAATTTGCAGATATCCACACTTGAATATCGAAA TGAGAGTGACCATGATGTTTGCCCTTATGTCCACGACAGAAAATTAGAAGTCATCGAGGTTCAA GCTGGTTTCTGCATTTTCCATTTGTGTTCCTTTCCAAATTGATGTCTAATAATTTTAGTATCTT TCTGGCAGAGCAGGTTCCCTTGGGTCAAGATGCAGATGATGTATCGAAACGCCTGTTTCATGTT ATACGTCCATATGCAGTCAGGCTTAAAAACTTTGGGGTTAATCTAAATAGAGATATACAAACTG TATGTGCCTCAATGCTTATATCTTCACCAATAGCGTCAATGCTCACATTTTCTTATCTATGCAA ACATCAACTCATGTTTGACAGTTAAGTCCACACGAAGTACTTATGGCAAGGGATAAGTTTCGTC AAGCACCTCTACCAGGCCTTCCCCATGTAAATCACGGAGATGTAGAATCTTGCTTTGCAGCTCT TATCACTCTTTATCATATTCGTAAGCTCCTTTCTAGTCATGGAATAAGACCAGCGTATGAGATG CTAGAAGAGAAATTGAAAGAAGGGTATGCTCTTACTTTCTTCTGTTGAACTGATTTTTGGGATG GCTTCAGTGGTTTTAGGTATAATAGCTTTTGATATCAAGAGCATCGCCTAAAACTATCACCCTT TGCAGGCCATTTGCTAGGTTGATGAGTAAGAATGAAGATATTAGGATGACGAAGCTTTTGATGC AGCAAAGGTTGTCACATGGAGCACCAAGCCCAAAATTGTCGAAGATGTTAGAAATACTGGTTGA TCATTTCAGTATGTTTTCTTTTTGAATTTTGATCTGGAGTTGATGTTAGTACTCAGCTGGTTTT ACAACTGAACATTGATATGATCTTATTCTATGGCTGCAGAAGTGAAAGATCCGAAGACATCACG GGTCATTATTTTCTCAAATTTCAGAGGAAGCGTAAGGTCAGTATAATTGTTGTTTGTTTTCCCT TGTTTAGTTGCTCATCATATTTCTTCGTTAGCATTCATCCGATTACGTTACTCTTCAGAGACAT AATGAACGCATTAAGTAATATTGGAGATATGGTCAAAGCAACTGAGTTTATTGGTCAAAGTTCA GGTTTGTTACTCTGATTTTTTCATCTGAAATTTCCAGTTACACATAAGTATCATTTATAATTGT TACAATATATGTTTCGTGCAGGTAAGACATTGAAAGGCCAGTCGCAAAAAATTCAGCAGGCTGT TTTGGAGGTATGTCTGTTTCCCTGTATCTGATTTGAACTTTGGTTTTTTTTTTTTTTTTTACAT TCTCTTGTATGATAAACTCATCTTTCCAACAGAAATTTAGAGCTGGGGGGTTCAATGTTATTGT CGCAACATCTATTGGTGAAGAAGGCTTGGATATCATGGAAGTTGACCTAGTTATATGTTTTGAT GCTAATGTATCTCCTCTGAGGATGATTCAACGGATGGGAAGAACTGGAAGGAAAAATAATGGTC GAGTTGATATCCTTTAGCTAGCTTGATTTCCATTACAAATCTTTGAAGTTACACTTTTTCATTG GAACGCTATATGCGACGTCTTTGAAGTTACACTTTCCATTCCTTGACTAGCCTTTACTAGTTCT TGCTTGTGAAGGATCAGAAAAGAACAGCTATATGCGAAAGCAAGCAAGTGGACGGGCTATTAAA AAACACATGCGGAATGGAGGAACAAATAGTTTTAATTTTCATCCTAGTCCAAGGATGGTAAGAG CTTTTCTTTTTTGATAATTTGTTTTCCTTACCTTGTTGCTTCAGTTTTCAACTTCTCTTAACTT CAGATATCTCTGTCATGTGTTATTATAGATTCCCCATGTTTATAAGCCAGAAGTTCAGCATGTT GAGTTTTCAATCAAGCAATTCGTTCCACGTGGAAAGAAACTACAAGAGGAGTATGCCACTGAGA CTCCAGCTTTCCAGAAAAAGCTTACACCTGCAGAGACGCATATGCTCGCTAAGTATTACAACAA CCCCGATGAGGAAAAGTTGAGAGTGTCCTTAATTGCGTTCCCTCACTTCCAGACATTGCCATCC AAGGTGCACAAAGTAATGCATTCACGTCAAACAGGCATGTTAATTGACGCTATGCAGCACTTGC AAGAGCCAACTTTTTCAGAACAGAGTAAAAGCTTCTTCACTGAGGTGTGGTTCAAAATCCTGGT AAACTTTTGTTTTTCCTTGCTTTCTGTGAATTCATTTTTCACTTACGTGGAATCACTTACTTTA ATAGTTTCGAGCTCCTTTGGGTGAAAGAGAAGAGCTTGATACAGGTCTGAGGGTTACTAATGAT CCAAAAGGTAAATATAGTCTCATTGATCTTGCCGAAGTATCAATTCTTAAAGTCGCATGGATAT ATATTCATTCCTAAACCAGCTCGTAGGAGGTCTGTATGCTTATAAGCTATCAGCTAGTCGGAGG TCTATAGGCTATAAGCTATTGAACAATGACCAAAAAGCCTATTTTAGGATATACTATCTGCTCT TTTTAGGTATTTTATATAGCTTCATGTCACTTCTCATCAACCCAAATGAAATTGCCAATAATTT ATAGGAAAGATGCTTATAGACTTTGATCAGATAGCTTATTGTCTGGTCAATAATGTATCTTTGC ATTGCATATATATGAAAATCAGGCCTTTCGTTGTAGTGTTGAAACACATCCATTCTATTGTATT AATGTGCAGATCTACACTCTGTCCGTGATTTGGAAGTCAACACATCACAGAGAAAGGCAAAACA AGTTGAATCTCCCACAAGCACCTTAGAGACAACAGAGAAGGATTACGAAGAATCTTCACCCACA CACCGTTATCTTTTCAGTTCAGAATGTGCATCCGTTGATACTCTGGGGAACGTCTTCGTAATGC CAGTTCCTCTTTTATTCTTTCCTAATGTTCTGGAGTCAGACAATACGCCTCTGCCTAAAACAGA AAAACAACATTCTTGCCGGAATACATCTCACATTGACTTAGTTCCAGTAGATACTTCGGAAAAA CATCGGCAAGATAATATCTCATGCAAGTTAAAGGAAAGATTCTCGCCAGACGGTGCCAGCGAGA CACTAGAGACTCATAGCCTTGTGAAAAGGAACTCCACCAGAGTAGGTGAAGATGATGTAGCGAA TTCTGTTGGAGAAATTGTGTTATCATCGGATGAAGATGACTGTGAGGGATTGGAGCTTAGTCCA CGGCTCACTAACTTCATCAAGAGCGGCATTGTTCCAGAGTCACCTGTCTATGACCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.20536606

Conservation Information
Conserved circRNAs	NA
PMCS	0.20536606

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT1G35530_circ_g.3

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