Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0579600_circ_g.2 |
ID in PlantcircBase | osa_circ_008197 |
Alias | Os10circ11013/Os_ciR790 |
Organism | Oryza sativa |
Position | chr10: 23115091-23115651 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ |
Parent gene | Os10g0579600 |
Parent gene annotation |
TGF-beta receptor, type I/II extracellular region family protein . (Os10t0579600-01) |
Parent gene strand | + |
Alternative splicing | Os10g0579600_circ_g.3 |
Support reads | 7/34/13/13 |
Tissues | leaf and panicle/root/root/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0579600-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_002993* osi_circ_008754 |
PMCS | 0.557048118 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
23115462-23115648(+) 23115512-23115093(-) |
Potential amino acid sequence |
MLASPSTWSFILEPSSMELPPLTQPMLIHGTEPLFLHRCLEPSWLIHTGESTRPLPSLQFSILL LPHPISTIPSPPSTGRLLLLSWPLNSWRALPMLASPSTWSFILEPSSMELPPLTQPMLIHGTEP LFLHRCLEPSWLIHTGESTRPLPSLQFSILLLPHPISTIPSPPSTGRLLLLSWPLNSWRALPML ASPSTWSFILEPSSMELPPLTQPMLIHGTEPLFLHRCLEPSWLIHTGESTRPLPSLQFSILLLP HPISTIPSPPSTGRLLLLSWPLNSWRALPMLASPSTWSFILEPSSMELPPLTQPMLIHGTEPLF LHRCLEPSWLIHTGESTRPLPSLQFSIL(+) MEDGSKINDQVEGDASIGNALQEFKGQDKSRSLPVEGGLGIVLIGCGSNKIENCRDGNGLVLSP VCISQEGSKHRCKKSGSVPCINIGCVRGGSSMEDGSKINDQVEGDASIGNALQEFKGQDKSRSL PVEGGLGIVLIGCGSNKIENCRDGNGLVLSPVCISQEGSKHRCKKSGSVPCINIGCVRGGSSME DGSKINDQVEGDASIGNALQEFKGQDKSRSLPVEGGLGIVLIGCGSNKIENCRDGNGLVLSPVC ISQEGSKHRCKKSGSVPCINIGCVRGGSSMEDGSKINDQVEGDASIGNALQEFKGQDKSRSLPV EGGLGIVLIGCGS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Ye et al., 2016;Chu et al., 2017 |