Detail information of Os10g0579600_circ_g.2


General Information
CircRNA Name Os10g0579600_circ_g.2
ID in PlantcircBase osa_circ_008197
Alias Os10circ11013/Os_ciR790
Organism Oryza sativa
Position chr10: 23115091-23115651  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ
Parent gene Os10g0579600
Parent gene annotation TGF-beta receptor, type I/II extracellular region family protein
. (Os10t0579600-01)
Parent gene strand +
Alternative splicing Os10g0579600_circ_g.3
Support reads 7/34/13/13
Tissues leaf and panicle/root/root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0579600-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    Yes
PCR primers for FL    F: TGGAACTACCGCCTCTAACG
R: TTCCAAGATAAACGACCAAG
Sequences
Splice junction sequence   CGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTAC
AAGACCATTGCCATCTCTACAGTTTTCTATCTTATTgcttccgcatccaatcagcactatacca
agccccccttcaactggaaggctcctgctcttatcttgggtagggtaaccccagcccccacccc
cttcttaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 134
Transcript exons: 23115091-23115123,23115551-23115651
GCTTCCGCATCCAATCAGCACTATACCAAGCCCACGGAACCACTTTTCTTACACCGGTGCTTGG
AGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTAT
CTTATT

Transcript length: 147
Transcript exons: 23115091-23115137,23115552-23115651
GCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAACGGAACCACTTTTCTTA
CACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCATTGCCATCTC
TACAGTTTTCTATCTTATT

Transcript length: 226
Transcript exons: 23115091-23115157,23115493-23115651
GCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCT
TGGCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACG
GAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAA
GACCATTGCCATCTCTACAGTTTTCTATCTTATT

Transcript length: 285
Transcript exons: 23115091-23115157,23115434-23115651
GCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCT
TGGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCCCTCAACTTGGTCGTTTATCT
TGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATGTTGATACATGGAACGGAACC
ACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATACTGGGGAAAGTACAAGACCA
TTGCCATCTCTACAGTTTTCTATCTTATT

Genomic sequence GCTTCCGCATCCAATCAGCACTATACCAAGCCCCCCTTCAACTGGAAGGCTCCTGCTCTTATCT
TGGGTAGGGTAACCCCAGCCCCCACCCCCTTCTTAATTAATTTATCTTCCTCCTCGATCCACCA
GTCGCATGGATCTATCTACACATACATAATTAATTAACCATATACTCCTATGAAAAATGAATAT
AACGCCTTTCCACACTTGTCAGAATACTTGTCTTGTGATTGCAGAACAACTGTCTAGTTAAATC
TGCCAATTTGGCATTTTTTTAAATCTAATCACGGACTCCATAGTTGTATCCTAATATAAATACT
TCATACATCTTCATTCATTGTAGCCTTTGAATTCTTGGAGAGCATTGCCTATGCTGGCATCTCC
CTCAACTTGGTCGTTTATCTTGGAACCGTCCTCCATGGAACTACCGCCTCTAACGCAGCCAATG
TTGATACATGGAACGGAACCACTTTTCTTACACCGGTGCTTGGAGCCTTCTTGGCTGATACATA
CTGGGGAAAGTACAAGACCATTGCCATCTCTACAGTTTTCTATCTTATT
Conservation Information
Conserved circRNAs osi_circ_002993* osi_circ_008754
PMCS 0.557048118
Functional Information
Coding potential Y
Potential coding position 23115462-23115648(+)
23115512-23115093(-)
Potential amino acid sequence MLASPSTWSFILEPSSMELPPLTQPMLIHGTEPLFLHRCLEPSWLIHTGESTRPLPSLQFSILL
LPHPISTIPSPPSTGRLLLLSWPLNSWRALPMLASPSTWSFILEPSSMELPPLTQPMLIHGTEP
LFLHRCLEPSWLIHTGESTRPLPSLQFSILLLPHPISTIPSPPSTGRLLLLSWPLNSWRALPML
ASPSTWSFILEPSSMELPPLTQPMLIHGTEPLFLHRCLEPSWLIHTGESTRPLPSLQFSILLLP
HPISTIPSPPSTGRLLLLSWPLNSWRALPMLASPSTWSFILEPSSMELPPLTQPMLIHGTEPLF
LHRCLEPSWLIHTGESTRPLPSLQFSIL(+)
MEDGSKINDQVEGDASIGNALQEFKGQDKSRSLPVEGGLGIVLIGCGSNKIENCRDGNGLVLSP
VCISQEGSKHRCKKSGSVPCINIGCVRGGSSMEDGSKINDQVEGDASIGNALQEFKGQDKSRSL
PVEGGLGIVLIGCGSNKIENCRDGNGLVLSPVCISQEGSKHRCKKSGSVPCINIGCVRGGSSME
DGSKINDQVEGDASIGNALQEFKGQDKSRSLPVEGGLGIVLIGCGSNKIENCRDGNGLVLSPVC
ISQEGSKHRCKKSGSVPCINIGCVRGGSSMEDGSKINDQVEGDASIGNALQEFKGQDKSRSLPV
EGGLGIVLIGCGS(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA