Detail information of BGIOSGA003276_circ_g.3


General Information
CircRNA Name BGIOSGA003276_circ_g.3
ID in PlantcircBase osi_circ_008963
Alias Chr01:10314841_10315138(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 11064805-11065102  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA003276
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GA-GA
Number of exons covered BGIOSGA003276-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTTGTAGGTTTAGATGCCTAGACATTTCTGCATGGGCGCAACAAGAATGTGCTGTGTAGCT
CTTGTTTGATCGTCTTATTTCAGTGAGTTCTTTGCTggttgtgcattactctctttattacttc
actttcagttttgattgttagtcaggtctcgtctaaagtttgcttcacttgattggctatttgt
tgttgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGTGCATTACTCTCTTTATTACTTCACTTTCAGTTTTGATTGTTAGTCAGGTCTCGTCTAA
AGTTTGCTTCACTTGATTGGCTATTTGTTGTTGCAATTAGGCACACCAAATACATGATCACCAT
CTGTTTAGCGTACCAAGATTCAACTAGTTTGTGGAAAATACATTGTTTTGCACTATTTAGGTAG
CAGTTACATTTTGTAGGTTTAGATGCCTAGACATTTCTGCATGGGCGCAACAAGAATGTGCTGT
GTAGCTCTTGTTTGATCGTCTTATTTCAGTGAGTTCTTTGCT
Conservation Information
Conserved circRNAs osa_circ_001358
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021