Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G10640_circ_g.4 |
ID in PlantcircBase | ath_circ_001941 |
Alias | At_ciR3498, Ath_circ_FC0292, Ath_circ_FC4835 |
Organism | Arabidpsis thaliana |
Position | chr1: 3516550-3516771 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G10640 |
Parent gene annotation |
Pectin lyase-like superfamily protein |
Parent gene strand | - |
Alternative splicing | AT1G10640_circ_g.3 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G10640.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.534283796 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3516718-3516552(-) 3516593-3516768(+) |
Potential amino acid sequence |
MWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPFIDSDTKLIVPLNNSANQNPPMPLDGTIIAP TDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPFIDSDTKLIVPLNNSANQNPP MPLDGTIIAPTDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPFIDSDTKLIVP LNNSANQNPPMPLDGTIIAPTDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPF IDSDTKLIVPLNNSANQNPPMP(-) MSLVSLSMKGESCCHQPEPLPSITPFPCTLIPFSFVKSIHHINPFPHVFESVGAIIVPSSGIGG FWLAELFKGTMSLVSLSMKGESCCHQPEPLPSITPFPCTLIPFSFVKSIHHINPFPHVFESVGA IIVPSSGIGGFWLAELFKGTMSLVSLSMKGESCCHQPEPLPSITPFPCTLIPFSFVKSIHHINP FPHVFESVGAIIVPSSGIGGFWLAELFKGTMSLVSLSMKGESCCHQPEPLPSITPFPCTLIPFS FVKSIHHINPFPHVFESVGAIIVPS(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chen et al., 2017a |