Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G01780_circ_g.1 |
ID in PlantcircBase | ath_circ_035937 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 302729-303067 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT5G01780 |
Parent gene annotation |
2-oxoglutarate-dependent dioxygenase family protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G01780.1:1 AT5G01780.5:1 AT5G01780.4:1 AT5G01780.2:1 AT5G01780.3:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.160625256 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
302975-302731(-) |
Potential amino acid sequence |
MMCLGRNWDPQTKYRKNTDIDSKAPEIPVTFNVLVEKAIREAHALIDRESGTEDAERILPVMSP DICIVNFYSETGRLGLHQVDIVKTCRELGVKPTGFYQPGYSVGSKLHLQMMCLGRNWDPQTKYR KNTDIDSKAPEIPVTFNVLVEKAIREAHALIDRESGTEDAERILPVMSPDICIVNFYSETGRLG LHQVDIVKTCRELGVKPTGFYQPGYSVGSKLHLQMMCLGRNWDPQTKYRKNTDIDSKAPEIPVT FNVLVEKAIREAHALIDRESGTEDAERILPVMSPDICIVNFYSETGRLGLHQVDIVKTCRELGV KPTGFYQPGYSVGSKLHLQMMCLGRNWDPQTKYRKNTDIDSKAPEIPVTFNVLVEKAIREAHAL IDRESGTEDAERILPVMSPDICIVNFYSETGRLGLHQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |