Detail information of Os12g0429200_circ_g.3


General Information
CircRNA Name Os12g0429200_circ_g.3
ID in PlantcircBase osa_circ_011340
Alias NA
Organism Oryza sativa
Position chr12: 13765215-13769248  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0429200
Parent gene annotation Similar to Relative to SR12 protein (Fragment). (Os12t0429200-01
)
Parent gene strand -
Alternative splicing Os12g0429200_circ_g.2 Os12g0429200_circ_g.4 Os12g0429200_circ_g.5 Os12g0429200_circ_g.6 Os12g0429200_circ_g.7 Os12g0429200_circ_g.8 Os12g0429200_circ_g.9 Os12g0429200_circ_g.10 Os12g0429200_circ_g.11 Os12g0429200_circ_g.12 Os12g0429200_circ_g.13 Os12g0429200_circ_g.14 Os12g0429200_circ_g.15 Os12g0429200_circ_g.16 Os12g0429200_circ_g.17 Os12g0429200_circ_g.18 Os12g0429200_circ_g.19 Os12g0429200_circ_g.20 Os12g0429200_circ_g.21 Os12g0429200_circ_g.22 Os12g0429200_circ_g.23 Os12g0429200_circ_g.24 Os12g0429200_circ_g.25 Os12g0429200_circ_g.26 Os12g0429200_circ_g.27 Os12g0429200_circ_g.28 Os12g0429200_circ_g.29 Os12g0429200_circ_g.30
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0429200-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACAAATACACGAGCTACATCACGAATTTTATCTATTGTTAATGAAGGAAGAACCCCTTTCGAA
CTCCAGAATGCAACGTCTGCATCAGAAATATTTACCcttgtaccaagtgaaaggctgtacactg
tccttctgcatgcgactccacccagcacatccctgcttctctggagcataaatcatagaaaact
cgcctttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTACCAAGTGAAAGGCTGTACACTGTCCTTCTGCATGCGACTCCACCCAGCACATCCCTGC
TTCTCTGGAGCATAAATCATAGAAAACTCGCCTTTCAAGCCGACCTGCATTTTAGACATAAATG
TAACATGTGCTTGTTGCACTTTGCACTCCAGATTAGGAATAAATAGTTTATGTACACAACACAG
AACCCCAGGTGTGGAATTTCTTGCAACGTATCAATATGACAGAGCCACATCTCTTTTAAAATGG
CGCTAGGCTTATGAAACAACAGGTGTCAACAAGTTCTGTATCATGTATGCAACCTTTTGCTATT
GCAGAAAAAAGTGTGAAAAAAAATGAAATATTTACAGTGTAAGCTAGGTCATTTCCAAACTTTA
TTGGTGTCATGGGCTTGGCCAGAGGGAACCACAACTATAAAGCCAGGTGGCAACAGATACTGTA
TCGTGTATGAAACCTTTGCTATCGCAGAAAAAACAAGGTGTGAAAATTGCATATTTACAGTGCC
AGCTAGGTCATTTCCAAACTTTATTGGTGTCATGGGCTTGGCCAGAGGGAACCACAACCATAAA
GCCAACATGTAGCTATATGTTGGATGAGATAGTTAACCAAGATTAGATGAAGATTTGTTAGAAG
AACTCTCTCATTTAGCGCACAGTTTCACCTAAGACCTCCTATGTAAAAGGGCTGTTGTGGTGTC
TTGGCAAGCACTAGTCTCATTCCATGAACCTTGTGGTGGGGACAAGGTTTGGAATACCATAATT
CTGGATTTTCCCTGACAAAAATTTCAATTTTTGCCGGATAACAGGTAATTAGGTGGTTACCAGC
TGGTGAGTGGCCAGAGAGAAGTCCATATCCTTAATTCCTTATTGGCAATTTTTTCTAACCTAGG
TTATGCATGTTACAGTGTTTTATTTCTTTAGCGGTAAGGCAATGAATTTTTTTTGGTAAATGGC
ATCCGCAATTTGACAGCTTAGTGCCCTTAACATTAGTACTGTAGCATCTTTATCCTTCTATTGT
AAAATTTCTATGGCTGCAGAGTTTTAACCATGCGACACCAGCATATATCCTTCCAAAGTAAAAA
ATTTCTTTGGTGCCATGGCAATGTGAATGGAAGAAAAGAAAACCAGACCAATTGCAGTCAAACA
AGTCAAAGTAAAGATGAATAAAAATTCAAACAAGGCCTACGTTGTTACTAGAGCAGTGCATTGT
TATTCTCATACTGAAAAACCACAACGTACTGTACCATTGTTTGGTATTCTGTATGGTTTTTTCG
TTCTTGTTTTCTGGCAGTCAACCTTGTAAGAAATGGTATTTGCTGACATTCCAGAATAATTTGC
TATTTACCGATCCTGAACCGTATTTTAAAAAAAAACAATGTATTTAGCAAACTAATAATACCGT
GTGTACCGCACAACCGTATGCACAATCCGAATTGTTACAGAAAAAGTACATATGAATGGTTATT
ACCTGATATGTCCAAAGGGAATTAGTTAGGTCAACGTCCCCATCTGACAAGCCAGTGAGTGTTA
CTTGACCTCTAAATCCAGCTCCATCTTTCTCCAAGAAAGCACCATAGTTCTTTGCATTTGTCCA
AGAGGTCATGATACAACAAACAATATATTATGTTTTGTACATGGTGACTATGTATGCAGATAAA
ACAGAAGCAGACATATAACCAAATAAAATGATACCATCACATGCACAGGCATTGTATAGATTGT
TCTAGCTTCAACATAAATGAAAGTTCTTCGCTCACTATTACTTTGTCAAGTTTACAGGAATAGG
AATAAGAAATTTTCACATACCAAACGTGTCCCAACCTGGGTAAAAACTTACAACTAAAACCACA
TCAATAAAAGGAAACCTACAAAGGATATGCCCCTTTTGCTATGTGTGGTTGCACCTTGAAATCT
CATATTAATTAAAAATTTATTACAACAGATATGAATGCTCCTGGCCTCATGATACAAATGCTAA
GCTTAAATGGAACATGAAAAAAATGGAATTAACGCATTCTTGAGCTTTGTAAAAATTCCACTTA
ATCCATTAAACTACAAATAAACTGGACTAGTCCCTTAGACTGAATGCTAACAGGGCTCAGTGAC
AGCTAGATAGTACGTTTTTGCTGATGGGTCTTAAAAGAAAATAGAGTTAACAATGTGCTTGCAA
AATCCCCATCAGATGGATCTCTACAACAAAAGTCACTGCGATTACATTATGTCATCAAAATAAC
CTTGGAAATGTCAATTGACCCGGGTTTTGCATGTTTATGGGGTTGTGTGAGTTTGTTAAATGGA
CTTTTTGCAAAGCCCAGAGAGATAAAAATCAACTTCCAAAAAGGAAAATTCAAATACCTGCAAG
CCAACAATCTCTGAAAGTAATGTCAACTCATTAAGCCCTTCAACCAATTGAATCGGTTGTTTCA
GTGAGACCCAGTGACCAACTTGACTGCCTTCATATTGAAAGGAAACCTTATTAAACGACTGAAA
TATTGCTATCAATGCGTTAATGAAGAAATGTAACACCACAGCATGCAAGACTGCATTTTCAAAT
GTTATACCAAGACCAGACCATTTAATTTCTGAGCGCTTAACAAGATCCCAACTATGTAGCATGG
GTACCTCCTGAAATGTACTGCATATGTACTAGACATGATTTGGTAACTTTTCTTTTTTGTTCAT
TTAAAAAAATAAAATAATTGGCAATAACTCATTACTTCCTCCCTGGTACCTCTAGGCCAAACCT
CTTCCTTGGATGCCCATGGAAAGCCAGTTTAACTATCCACTTCCTTCGTACCTGGGCTATTTTT
TTAACTATCCACTTCCTTCGTACCTAGGCTATCCTTCAGAAGCCTGGTTCACGGGATTTGGTTG
CAGCAGCGTGTCAGCGCTTGGAGCAGGTGGTCAGGGAATGTTTTACCTAGGGACATGGGTGGCG
GCCTAGCCTGAAGATTGGTGCTCACTAAATTTTACTGCTTTCCTTCTCTTGTTACAAACTCTTT
TGTGGTTGTGTCTGTGTTTTGGCTGTGTGCATCCTAGTTATGCAGAGGCTGAGAGTTTTCTTAG
TATGGTCCTATCAACTTGATGTAATTGTCTAAGATTAATAAAAGCTTCCTTTATCAAAAAAAAA
AAAAGAAGCCAGTTTAAGGCTGCCAACTCGACAACTACCATACAAACTATACAACCTAATCCCC
TCCATTGCATATCTAACTTCTATATTTTTAAATTATCACACACACGCGCGCACGCGAACATGTA
TCAGTGTTTTAGGGGAAACGGCTTACCACGGTATCACCTTATCACGTACTCTAATCAAATGCTC
TACACAAAAAGCTTACAGACAGGAAGCTTAAAACAGGTGGGCTAAAGTACTTCATTACCCAATA
CTTAATGTATCTCCACTCCAACTGATTGTACAATTATATCATGGGGTGAATAACAGTTATATCC
AAGTAGGGAGGTTGTCAGCCCATGGGGTGAATAACAATTAAAAGAATGTAATAAGGATGCGGAA
AAAGGTCTCAGTTCTCTCATTATCCTAGTGGCTTGGGAGATTTGGAAGCATAGGAATGATTATA
TGTTTTAATGGGGCTAGTCCTAGTGTTATGGCTGTCATTCAAACTGTAGCAAATGAGTGTAGCT
TTTGGTGTTTGGCCGTAGCCACTAAGCTCGGAGAGTTCCTTAGAAGGTCGCTTACCCCGGTTGG
GTAAAGTTGGGTAATGTGAGCCTTTTGTTTTGTAACTTCTTTTAAGTGCTTTGGGGGAGAATGA
CGCTTTAGTCACTTCCCCGTCTTTTATTCCTTCTTAATGAAATGAGCATACTCATGCGTATTCC
CAAAAAAAAACATATAAACACTGACAAATTAAATGCAAAGCATTTTTTTCATAAAGATTAAGAA
ATTGAAATTAATACCTGCAAGCTTGCCATTTACAAATACACGAGCTACATCACGAATTTTATCT
ATTGTTAATGAAGGAAGAACCCCTTTCGAACTCCAGAATGCAACGTCTGCATCAGAAATATTTA
CC
Conservation Information
Conserved circRNAs NA
PMCS 0.097914144
Functional Information
Coding potential Y
Potential coding position 13769191-13765290(+)
13765274-13769246(-)
13765300-13769236(-)
13765293-13769236(-)
Potential amino acid sequence MKEEPLSNSRMQRLHQKYLPLYQVKGCTLSFCMRLHPAHPCFSGA*(+)
MCWVESHAEGQCTAFHLVQG*(-)
MIYAPEKQGCAGWSRMQKDSVQPFTWYKGKYF*(-)
MLQRSRDVLGGVACRRTVYSLSLGTRVNISDADVAFWSSKGVLPSLTIDKIRDVARVFVNGKLA
GSQVGHWVSLKQPIQLVEGLNELTLLSEIVGLQNYGAFLEKDGAGFRGQVTLTGLSDGDVDLTN
SLWTYQVGLKGEFSMIYAPEKQGCAGWSRMQKDSVQPFTWYKGKYF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017