Plant Circular RNA Database

Detail information of Os10g0370800_circ_g.11

			
						 General Information
					
						CircRNA Name
						Os10g0370800_circ_g.11
					
						ID in PlantcircBase
						osa_circ_006646
					
						Alias
						Os_ciR6687
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 11707608-11708546  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os10g0370800						
					
						Parent gene annotation
						
							Similar to Exo-1,3-beta-glucanase precursor (EC 3.2.1.58) (Fragm
ent). (Os10t0370800-01);Similar to cellulase containing protein.
 (Os10t0370800-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os10g0370800_circ_g.6 Os10g0370800_circ_g.7 Os10g0370800_circ_g.8 Os10g0370800_circ_g.9 Os10g0370800_circ_g.10 Os10g0370800_circ_g.12 Os10g0370800_circ_g.13 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0370800-01:3

General Information
CircRNA Name	Os10g0370800_circ_g.11
ID in PlantcircBase	osa_circ_006646
Alias	Os_ciR6687
Organism	Oryza sativa
Position	chr10: 11707608-11708546 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os10g0370800
Parent gene annotation	Similar to Exo-1,3-beta-glucanase precursor (EC 3.2.1.58) (Fragm ent). (Os10t0370800-01);Similar to cellulase containing protein. (Os10t0370800-02)
Parent gene strand	-
Alternative splicing	Os10g0370800_circ_g.6 Os10g0370800_circ_g.7 Os10g0370800_circ_g.8 Os10g0370800_circ_g.9 Os10g0370800_circ_g.10 Os10g0370800_circ_g.12 Os10g0370800_circ_g.13
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0370800-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACTGGCGATCCACCATCCAACAGGGATTCTTACAGCATTTAATCCATTTGATGAGATAAACTT
GAAGTCGTTCTCAAGTATGTATGTGCTCCAGTGTTCctacatatgtgagaggcccgttctgctt
tgtgacactcctgagctcagcagaacgatcatttctcacaaactgtatattccactccgctgtt
gtgttgtc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 679
Transcript exons: 11707608-11707960,11708063-11708218,11708377-11708546
CTACATATGTGAGAGGCCCGTTCTGCTTTGTGACACTCCTGAGCTCAGCAGAACGATCATTTCT
CACAAACTGTATATTCCACTCCGCTGTTGTGTTGTCAAACGATCCATTGAACATGTTATAGTAG
TGCACATCAAACACAGCACCAAAGAAGCCACCGGCAAACTGGAGAATCTCATTCGAGTAGTCTG
CATTAATTGGATTCGACATGATCACATATGCATCTGATGTATATTTTCGCACAGCATTGTACGC
ATCTTGGTAGTATTTCTTTAGCATTCCAGCTGATACTTTTGGTGCCAACGGTTCGTTTAGTAGT
TCAACTGCCAGGAGACTTGGGCTTTTGGCATATCTGGATGCAAGGAAATCAATCACTTGAACAG
TTTGGATGATGGTTTCATCGGTGGTGCCCCATGTCTGTGAACCATCTCTACTACCACTGTGTTC
CCATGGATTCTGCGATCCAGGTGCAGCATGCAAGTCCACAATGACACCTAAATTGTACTTCTCT
GCCCATCGAAATGCATTATCCAATGCTTCTAGAGATCCGCCAACAAAGGGTGCAGGAGGGTTTG
GGTCACTGGCGATCCACCATCCAACAGGGATTCTTACAGCATTTAATCCATTTGATGAGATAAA
CTTGAAGTCGTTCTCAAGTATGTATGTGCTCCAGTGTTC
						
					

						Genomic sequence
						
							CTACATATGTGAGAGGCCCGTTCTGCTTTGTGACACTCCTGAGCTCAGCAGAACGATCATTTCT
CACAAACTGTATATTCCACTCCGCTGTTGTGTTGTCAAACGATCCATTGAACATGTTATAGTAG
TGCACATCAAACACAGCACCAAAGAAGCCACCGGCAAACTGGAGAATCTCATTCGAGTAGTCTG
CATTAATTGGATTCGACATGATCACATATGCATCTGATGTATATTTTCGCACAGCATTGTACGC
ATCTTGGTAGTATTTCTTTAGCATTCCAGCTGATACTTTTGGTGCCAACGGTTCGTTTAGTAGT
TCAACTGCCAGGAGACTTGGGCTTTTGGCATATCTGTAGACCAATTAAGACGAAAGATGAGATC
CCTTTGGTTTTTCTTTTCCGGTTTTAAGATAATGATAAGGAAAATATTATTTATTGATATCTTT
GTCAGACCTGGATGCAAGGAAATCAATCACTTGAACAGTTTGGATGATGGTTTCATCGGTGGTG
CCCCATGTCTGTGAACCATCTCTACTACCACTGTGTTCCCATGGATTCTGCGATCCAGGTGCAG
CATGCAAGTCCACAATGACACCTAAATTGTACTTCCTGTGCACAACAACAAAGATCGCTTATTA
CGTATATGACATCCTTTTTTCAATCCAAGCTAAGAGAATTTATTTAATGATGAAGAAATTACGG
TGGTTTTGCTAAAAAAAAAAAGAAACTACTATACTGTGGTGACATGGAAAAGTAAATATTCTTA
CTCTGCCCATCGAAATGCATTATCCAATGCTTCTAGAGATCCGCCAACAAAGGGTGCAGGAGGG
TTTGGGTCACTGGCGATCCACCATCCAACAGGGATTCTTACAGCATTTAATCCATTTGATGAGA
TAAACTTGAAGTCGTTCTCAAGTATGTATGTGCTCCAGTGTTC
						
					

			
		

Sequences
Splice junction sequence	CACTGGCGATCCACCATCCAACAGGGATTCTTACAGCATTTAATCCATTTGATGAGATAAACTT GAAGTCGTTCTCAAGTATGTATGTGCTCCAGTGTTCctacatatgtgagaggcccgttctgctt tgtgacactcctgagctcagcagaacgatcatttctcacaaactgtatattccactccgctgtt gtgttgtc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 679 Transcript exons: 11707608-11707960,11708063-11708218,11708377-11708546 CTACATATGTGAGAGGCCCGTTCTGCTTTGTGACACTCCTGAGCTCAGCAGAACGATCATTTCT CACAAACTGTATATTCCACTCCGCTGTTGTGTTGTCAAACGATCCATTGAACATGTTATAGTAG TGCACATCAAACACAGCACCAAAGAAGCCACCGGCAAACTGGAGAATCTCATTCGAGTAGTCTG CATTAATTGGATTCGACATGATCACATATGCATCTGATGTATATTTTCGCACAGCATTGTACGC ATCTTGGTAGTATTTCTTTAGCATTCCAGCTGATACTTTTGGTGCCAACGGTTCGTTTAGTAGT TCAACTGCCAGGAGACTTGGGCTTTTGGCATATCTGGATGCAAGGAAATCAATCACTTGAACAG TTTGGATGATGGTTTCATCGGTGGTGCCCCATGTCTGTGAACCATCTCTACTACCACTGTGTTC CCATGGATTCTGCGATCCAGGTGCAGCATGCAAGTCCACAATGACACCTAAATTGTACTTCTCT GCCCATCGAAATGCATTATCCAATGCTTCTAGAGATCCGCCAACAAAGGGTGCAGGAGGGTTTG GGTCACTGGCGATCCACCATCCAACAGGGATTCTTACAGCATTTAATCCATTTGATGAGATAAA CTTGAAGTCGTTCTCAAGTATGTATGTGCTCCAGTGTTC
Genomic sequence	CTACATATGTGAGAGGCCCGTTCTGCTTTGTGACACTCCTGAGCTCAGCAGAACGATCATTTCT CACAAACTGTATATTCCACTCCGCTGTTGTGTTGTCAAACGATCCATTGAACATGTTATAGTAG TGCACATCAAACACAGCACCAAAGAAGCCACCGGCAAACTGGAGAATCTCATTCGAGTAGTCTG CATTAATTGGATTCGACATGATCACATATGCATCTGATGTATATTTTCGCACAGCATTGTACGC ATCTTGGTAGTATTTCTTTAGCATTCCAGCTGATACTTTTGGTGCCAACGGTTCGTTTAGTAGT TCAACTGCCAGGAGACTTGGGCTTTTGGCATATCTGTAGACCAATTAAGACGAAAGATGAGATC CCTTTGGTTTTTCTTTTCCGGTTTTAAGATAATGATAAGGAAAATATTATTTATTGATATCTTT GTCAGACCTGGATGCAAGGAAATCAATCACTTGAACAGTTTGGATGATGGTTTCATCGGTGGTG CCCCATGTCTGTGAACCATCTCTACTACCACTGTGTTCCCATGGATTCTGCGATCCAGGTGCAG CATGCAAGTCCACAATGACACCTAAATTGTACTTCCTGTGCACAACAACAAAGATCGCTTATTA CGTATATGACATCCTTTTTTCAATCCAAGCTAAGAGAATTTATTTAATGATGAAGAAATTACGG TGGTTTTGCTAAAAAAAAAAAGAAACTACTATACTGTGGTGACATGGAAAAGTAAATATTCTTA CTCTGCCCATCGAAATGCATTATCCAATGCTTCTAGAGATCCGCCAACAAAGGGTGCAGGAGGG TTTGGGTCACTGGCGATCCACCATCCAACAGGGATTCTTACAGCATTTAATCCATTTGATGAGA TAAACTTGAAGTCGTTCTCAAGTATGTATGTGCTCCAGTGTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.211604428

Conservation Information
Conserved circRNAs	NA
PMCS	0.211604428

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11708532-11707729(+)
11708100-11707833(+)
11707889-11708523(-)
						
						Potential amino acid sequence
						
							MCSSVPTYVRGPFCFVTLLSSAERSFLTNCIFHSAVVLSNDPLNML*(+)
MMVSSVVPHVCEPSLLPLCSHGFCDPGAACKSTMTPKLYFSAHRNALSNASRDPPTKGAGGFGS
LAIHHPTGILTAFNPFDEINLKSFSSMYVLQCSYICERPVLLCDTPELSRTIISHKLYIPLRCC
VVKRSIEHVIVVHIKHSTKEATGKLENLIRVVCINWIRHDHICI*(+)
MLKKYYQDAYNAVRKYTSDAYVIMSNPINADYSNEILQFAGGFFGAVFDVHYYNMFNGSFDNTT
AEWNIQFVRNDRSAELRSVTKQNGPLTYVGTLEHIHT*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11708532-11707729(+) 11708100-11707833(+) 11707889-11708523(-)
Potential amino acid sequence	MCSSVPTYVRGPFCFVTLLSSAERSFLTNCIFHSAVVLSNDPLNML(+) MMVSSVVPHVCEPSLLPLCSHGFCDPGAACKSTMTPKLYFSAHRNALSNASRDPPTKGAGGFGS LAIHHPTGILTAFNPFDEINLKSFSSMYVLQCSYICERPVLLCDTPELSRTIISHKLYIPLRCC VVKRSIEHVIVVHIKHSTKEATGKLENLIRVVCINWIRHDHICI(+) MLKKYYQDAYNAVRKYTSDAYVIMSNPINADYSNEILQFAGGFFGAVFDVHYYNMFNGSFDNTT AEWNIQFVRNDRSAELRSVTKQNGPLTYVGTLEHIHT*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os10g0370800_circ_g.11

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