Detail information of BGIOSGA000859_circ_g.1


General Information
CircRNA Name BGIOSGA000859_circ_g.1
ID in PlantcircBase osi_circ_010692
Alias Chr01:32166337_32171035(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 34027309-34032006  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA000859
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA000859-TA:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGCCTTCGCCACCGGCGGCCCCTGCTGATGCTGGTACCCTGGCGCCGCCGGCGAGTCGTGGTC
CTCCTCCACCGCCACGCCCAGCGCCGCCTCCTCCTCccatttgccggcttctttgcattctctc
cgtgctccttggtgttaactggcacaggcgatttgctggctagcttatcagcctctcttgcggc
atcgatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATTTGCCGGCTTCTTTGCATTCTCTCCGTGCTCCTTGGTGTTAACTGGCACAGGCGATTTGC
TGGCTAGCTTATCAGCCTCTCTTGCGGCATCGATGTCCTTCTGGCTCAGGAAGCTGGGCTGGTT
GGTCGAGGACAACAGCCTTGCCCACATCCTGTCGGTTATCTTAACCTTGTTTCTTGTTGATGTT
ACCCTCTGTTTGTCAGAACACAAAAATTGATGTCATGCGAACTGTTAAAGGGTAATATTTAATT
CATGATAATTGTTGAGGGTAATATGTTTGAATCTGGGAACCGGAGAAAATTAAGGTAATACAAA
AATTTGTACTCACGTGAAATGGAATGTATGCATGCCTGCCATTGACCATTCCAACTGTGAAGCT
ATATCCAGCCATTGCCCCATGAATGGCACTGTGCGCCAGCAGTGTGCAGTAGACATTGTCTGAT
GCATTGCTTGGAATTGCACGGATCATGTAGGTTGGATCTGCCATTAGAAATAACAGGCTGTTAT
TGCAACATTCCATAGGGAGATACTCAGATACATATAAAAAGTAGTACTTCAAACTAGCACTCCG
CATGTGCATCGAGAATTGAACATAAAAACAAGATCTTTACCTATATACTTAATAGTCATCTCCA
TCTTTTTGTTCTTGCAGTAATCCTGGAAGGAATTCATGCAAAAAAAAAAATCTCAGAGAAATCT
TCAAGGAAACTTGTAATTAATTAATTGGTTATGATATCCTGGAAATCCATAAGATACTAAAAAT
AGCAACTACAAACATAATGGGTCACTGAGATACTAACACTGTACAAAATCAATGTATGGCTCAA
CACCGAGGCAGCTGACCCACTGAGCACAGAGCCATGTAAGCTTTACATACGCATGCACCTAATC
TATTATGAATTACAGAACAAACATACAAGAGATGAATGCAATCCGTGAACAGGACCACACTCAC
ATAAAGATACAGCTGGCTAAATATGTTAACTGTGATTGAACATCGAACTGACAAAACGTAAACC
TCAACCTACACTTACTTCTATTGATTAACAGGTGAGCATATAAAAAGCATCGCTTTTAACAGGC
GAACATATAAAAAGTATGGCTTTTATAGTTAAAATTGTTTAATGTAATGCTGCTCTTAGGTATG
AATTTCTACCTTTCCTATGGTATATTTCCAAACCCAAAAGCAAATACCACATGCATTGGTGTTC
AGCAAGCATTCTTGCAGTTTTAGTGGAAATTTAAAAGATGAATGCATAAAGCGCATGTGAAGCA
ACACAATCAACAAAATGCAAAATCGAACTGGATCAGTCCCATGCAAACTCAAGTAAATAGACAG
TGCATACCTTAATCTTGTGAGTCAGCCAAGACCAACATCAAGAAGTAGCTTATTTCCAGACGCA
TCTATTTGATCTGCTGCAGCTATACTTTTGGCAATAAGATCCTGTCCTGCTCCCTCAGCTACAA
CAATAACCATGTGGTTGTTCTCTTTCAACCTCTTCTCTATGTACTCAAACAGTCCACCCTCCCC
TTCCAAATAAAATGGTGACTCAGGAATTAAGCAGCAGTCCTATAGAAGACAGAGAAACCCAATG
AATAGGAGGTACCATTCGTGGAGAAGAAGAATGCTAGGTGGTCCAATGCATTACTGCACCCAGA
ACATGAATACACAGAATATTTGACTCGAAGAAACTAAAGAACGACATAGATATAAAGCATTAAC
TTACCACGTCTCTGCTTGCAAGAGTAGCATACATTGCAATAAACCCTGCAAGGTACCATAGAAA
AGGAATAAGGACAGTATAATGAAATAACTAAAACAAAAAAGTTAGAAATTCATCATGGATTCAC
ATGAGGAATATGTGAATTCCATTCTGTAGGCAGAAAATAAACATTTCATGAACAGCTCTCTTGA
ATTAGAGTATATAAGCAAAATATAGTTCTCTTAGTTTTACGTGCATATTTATCCAATTAAAGCA
TTAAAGAAACAAGGGAGCAGAGAAACGTAAGAATGCAGCTGCAGCAAAGACGTATATGGGGCTG
ATATAGAAAACTAACCACTATAGCGACCCATCAGTTTAACTAAGCCTATTCCATTCTCAGCACT
TGAAGCCTCAACATGAGCTGCATCAATGGCACGCTGGGCCTCTTCTACAGCACTATCAAAACCA
AAGGACTTGTCTATAACCTGAGTTTTAATGTACAGAAAAAATCAGTACTTCTTTAATAGAAAAA
TTGTGCAGTATCAAAAGAGTTGTAATGCTTCTTTGCAGGCAAAAATAAACGCTTGTAATCATAA
ATTACCGCTATATCATTATCAATTGTCTTGGGAACACCAGCAACAGCAACTTTTAGACCACGTC
TACGAATTTCCTGCCAATTGAAAAAGGGAAAAATCAAATTAAAAATCAGTTCTGAAAAACAAAA
CTCCAACAATATTTTCCCTCAGTTTCTAATGATATGCACACTGCACATACAACAATTTTTAAGC
CATGCACACCACTCAACAAATTCCTGCTGCCAGAGTGCACATGAACAGATGAAGAAGTTTGACA
ATGTCTGGAGTCTCTACAAGATATGGAAGTTACTCATGATAGTGATTACCTTATATATTTCATA
TGCTCCCTTCTGAGTTCCATCCCCTCCAATGATGTATACCTAGACAAAGTACACAGGCATATTT
TACCCCAAATTCGAAATAAGGATTATTATACTAAGACAAATAGTTACAACACCTACCTGATTAA
TACCACGATCTTGAATGTTGTCAACAATTTTTTTGGTGTCATGACCACCCCGTGATGTTCCCAG
AACTGTGCCACCTCTTTTGTGGATATCATTGACACTTTTAGGTGTCATGGGAAGATAATTACTC
GAATAGAATCCCTTGTATCCATTCTACAGAATTACTTATAGCATGTTAGAAATAAGAGGAAAGG
TGCAGTTAAAAAATTGGCATCACCAATGTGCATGCTACAGTCTTTTACTCTCATGGCAAAACTA
CTAGCTGGCACAAATTTCACATTAGTCGTTTGCACAAAAATATAATACAATTCACAGATCGCAC
TTGCAACTATTTGAGTATAATACAATTGAAATCATTTCCTCATTATAGGTCAGCAGAACACGCC
ATTCAAAATTCCTACTAAGTGATATTCCACATAATACATTTTGGTATTTAGGTCAGCTGGAAAT
ATTTCAAACCTGTATGCCGAAGATATCATTGACATTGTACATGTGGGACAAGCCGCACACCAAC
TCTCTAATGACCGTATTTAGCCCAGGGCAAAGGCCTCCGCAGGTTACAATGCATGCTTTGACAT
CTTCTGACTCGAAGTACACCTGATAAGATTTGAGAATTTGTGTCAGCCTAAATGTGGGTAATGC
ATGCCCCTAAATGATAATAGGCATATATCCAAGGCATCCTACCCTCTGACGAGGCCCAGCACGA
CGGAAGTGAACTCCTCTGGGACTGTCCTTCTGAACAACCACCTGTGATGGCAAAACATCAGGGT
GAGTATCATTCAGAATTACGTCTACATATCAAAACATCAGTGGAGACTTTTTTTTTCACCTTTT
CAGGTACAGTATCATCTGCATTGACAAAATACTGCCTGGTAAATGTACAAAGAGAACATTTAGC
TTAAAACATTTCACAATAAATATGACGAGGTTGACCAAAGGGGATAGCAAAGTCAAACCGAAAG
AGAAGCCTTACTTGACGGTCGAATAGGCTGGATGATCTTGCAGTGGATTAGGAAAAGTCTGCCA
GGGGTTAAACGAGAAAATTATTAGCTTAACCCCCATGACATCACCTTGAAAACAACTTTTCAGA
ATATAATTGAAGGCAAACAAATGAGTTGTTGCGTATTCCACGTTCAAAGGATGCACATGTAGCT
GATTTATAGGAGCCAGGGAAGGCAGCCAACCAGCCTATTAACAGAAGTTACTTCCAAAGTGAAG
CTATGCTCTATTCTATTTCTACCAGATCAAACCTCCATCCAGATACCTACAAGCACAAGTAATT
AAGAGATCCACGCCACAACCTCAATTGCAGGTACGAATCGCCAAAGCTGTACTTGTCCTACACT
AATGCGACTTTTTCTGTTTGATAAATATCCAGCTAATGAACTGAGAACAACCGAAATGGATCTC
ATTCCAGAACCCATCCCCGGCATGACACGCCAAAAACACCAAAAATAAAGGAACCATCCAAATA
AAGCTCCACCTCACACAAATGGCAGAACTAAATCTAAAGCTTTCACGAGATCCGCGTCTCCAAA
AGAACCATCAAAATCACAAGCAGCACTGCATACTGCAATTTTTTCACCGCAGGCGTCGAATCTG
GCAGCGGAACAACCAGCGCGAGACAAGGATGAGTGGGAAGAGGAGGGGTGTCGGCGCTCACTGG
GAGATCGGAGAGGTAGTCCGTGAAGTGCGGGACGTCATCGAGGAGGTAGCCGTAGTCGCCCTCC
TCGAGCTTGGCGTAGGCGGCGTCGTCGTCGGGGAGGCTCATGGCGGAGGCGTTCCGGAGGGCGC
GGAGGTTTGGGTACGAGTCGCGGGAGATCCGCACGCACGTGGCCGAGAATGGCAGCGCCTTCGC
CACCGGCGGCCCCTGCTGATGCTGGTACCCTGGCGCCGCCGGCGAGTCGTGGTCCTCCTCCACC
GCCACGCCCAGCGCCGCCTCCTCCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021