Detail information of Zm00001d032704_circ_g.1


General Information
CircRNA Name Zm00001d032704_circ_g.1
ID in PlantcircBase zma_circ_003632
Alias ear_test_circ_002205
Organism Zea mays
Position chr1: 235325106-235325318  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d032704
Parent gene annotation Exportin-4
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues ear
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered Zm00001d032704_T061:1
Zm00001d032704_T078:1
Zm00001d032704_T040:1
Zm00001d032704_T074:1
Zm00001d032704_T019:1
Zm00001d032704_T012:1
Zm00001d032704_T055:1
Zm00001d032704_T059:1
Zm00001d032704_T025:1
Zm00001d032704_T075:1
Zm00001d032704_T046:1
Zm00001d032704_T069:1
Zm00001d032704_T076:1
Zm00001d032704_T006:1
Zm00001d032704_T008:1
Zm00001d032704_T011:1
Zm00001d032704_T071:1
Zm00001d032704_T007:1
Zm00001d032704_T032:1
Zm00001d032704_T003:1
Zm00001d032704_T013:1
Zm00001d032704_T043:1
Zm00001d032704_T052:1
Zm00001d032704_T001:1
Zm00001d032704_T073:1
Zm00001d032704_T054:1
Zm00001d032704_T002:1
Zm00001d032704_T036:1
Zm00001d032704_T022:1
Zm00001d032704_T005:1
Zm00001d032704_T033:1
Zm00001d032704_T047:1
Zm00001d032704_T057:1
Zm00001d032704_T009:1
Zm00001d032704_T050:1
Zm00001d032704_T053:1
Zm00001d032704_T004:1
Zm00001d032704_T014:1
Zm00001d032704_T037:1
Zm00001d032704_T026:1
Zm00001d032704_T010:1
Zm00001d032704_T045:1
Zm00001d032704_T063:1
Zm00001d032704_T029:1
Zm00001d032704_T064:1
Zm00001d032704_T031:1
Zm00001d032704_T027:1
Zm00001d032704_T024:1
Zm00001d032704_T067:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTCCATCTTGTCCAGCAAATGCGCTATGAATGCCAACCCTAAGACTAGCTCATCTCCCTGTC
TTTTCTGGTGACACTAGCTCTTCAAGATCTACTAGAcatctctaccttctgcctgtgggaattg
aacaaaacgagtcgccaccacaaaatccccaccgtttctgtgcgtctaacaaacgcatttacac
gacgatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTCTACCTTCTGCCTGTGGGAATTGAACAAAACGAGTCGCCACCACAAAATCCCCACCGTT
TCTGTGCGTCTAACAAACGCATTTACACGACGATCTCGTGGCCAGGGACGCCTCCATCTTGTCC
AGCAAATGCGCTATGAATGCCAACCCTAAGACTAGCTCATCTCCCTGTCTTTTCTGGTGACACT
AGCTCTTCAAGATCTACTAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.114632238
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018