Plant Circular RNA Database

Detail information of Os02g0221500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0221500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_013907
					
						Alias
						Os_ciR1169
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 6785715-6786354  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, PcircRNA_finder, circRNA_finder, find_circ
					
						Parent gene
						
							Os02g0221500						
					
						Parent gene annotation
						
							Nucleotide-binding, alpha-beta plait domain containing protein. 
(Os02t0221500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0221500_circ_g.3 						
					
						Support reads
						15/33
					
						Tissues
						root/shoot, root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0221500-01:3

General Information
CircRNA Name	Os02g0221500_circ_g.2
ID in PlantcircBase	osa_circ_013907
Alias	Os_ciR1169
Organism	Oryza sativa
Position	chr2: 6785715-6786354 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, PcircRNA_finder, circRNA_finder, find_circ
Parent gene	Os02g0221500
Parent gene annotation	Nucleotide-binding, alpha-beta plait domain containing protein. (Os02t0221500-01)
Parent gene strand	-
Alternative splicing	Os02g0221500_circ_g.3
Support reads	15/33
Tissues	root/shoot, root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0221500-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GTAACAAATCCAAATCCACGAGGCATCTTAGTATGCTTGTCCTTCATAATTACAGAATCAGTTA
TAGCCCCATACTTCTCAAAATGCTTGGAGAATGATTctgctttccaccaaggtcacgcattctt
ccctctgatataaccctttccacagaatcctcactttcaaaagtgacaaaaccaaatcctctag
aacgccca

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 437
Transcript exons: 6785715-6785884,6785962-6786064,6786191-6786354
CTGCTTTCCACCAAGGTCACGCATTCTTCCCTCTGATATAACCCTTTCCACAGAATCCTCACTT
TCAAAAGTGACAAAACCAAATCCTCTAGAACGCCCAGTGCTATGATCAAGCATTATTTGATGTT
CAACAATCTTACCATATGGGGAGAAGTGCTCCCTCAACTCATCTTCAGTTAGTGATGAAGGTAA
TCCACCAACAAAGATTTTCCTTGTCTTTGGACCATCTTTTGATGACATTTCTTCCCTTGGGACT
GTCCTTTTAACTTCAACCGTTCTTCCATCTATAACGTGCTCATCCTCCAAAACCTTGTCTATAA
CAGATGGATCGGAAAATGTAACAAATCCAAATCCACGAGGCATCTTAGTATGCTTGTCCTTCAT
AATTACAGAATCAGTTATAGCCCCATACTTCTCAAAATGCTTGGAGAATGATT
						
						Genomic sequence
						
							CTGCTTTCCACCAAGGTCACGCATTCTTCCCTCTGATATAACCCTTTCCACAGAATCCTCACTT
TCAAAAGTGACAAAACCAAATCCTCTAGAACGCCCAGTGCTATGATCAAGCATTATTTGATGTT
CAACAATCTTACCATATGGGGAGAAGTGCTCCCTCAACTCATCTAAAATTTAATATCTTGTCAG
TTTTCATTGTAACTACAAATCGTTGAAGATTTTTATCTGTAAGTCTAATAAGTACCTTCAGTTA
GTGATGAAGGTAATCCACCAACAAAGATTTTCCTTGTCTTTGGACCATCTTTTGATGACATTTC
TTCCCTTGGGACTGTCCTTTTAACTTCAACCTGAACAAATAAAAGTTAAGCAAGATAAAGAGAA
GCCAAGATAAACCCAAAGTGCGACTTTGCAAAAGAGTGTCAACTGTAGACTGAAGTCCCACGTA
ACGGCTGATCTAAATCAAGATGTCCTACCGTTCTTCCATCTATAACGTGCTCATCCTCCAAAAC
CTTGTCTATAACAGATGGATCGGAAAATGTAACAAATCCAAATCCACGAGGCATCTTAGTATGC
TTGTCCTTCATAATTACAGAATCAGTTATAGCCCCATACTTCTCAAAATGCTTGGAGAATGATT

Sequences
Splice junction sequence	GTAACAAATCCAAATCCACGAGGCATCTTAGTATGCTTGTCCTTCATAATTACAGAATCAGTTA TAGCCCCATACTTCTCAAAATGCTTGGAGAATGATTctgctttccaccaaggtcacgcattctt ccctctgatataaccctttccacagaatcctcactttcaaaagtgacaaaaccaaatcctctag aacgccca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 437 Transcript exons: 6785715-6785884,6785962-6786064,6786191-6786354 CTGCTTTCCACCAAGGTCACGCATTCTTCCCTCTGATATAACCCTTTCCACAGAATCCTCACTT TCAAAAGTGACAAAACCAAATCCTCTAGAACGCCCAGTGCTATGATCAAGCATTATTTGATGTT CAACAATCTTACCATATGGGGAGAAGTGCTCCCTCAACTCATCTTCAGTTAGTGATGAAGGTAA TCCACCAACAAAGATTTTCCTTGTCTTTGGACCATCTTTTGATGACATTTCTTCCCTTGGGACT GTCCTTTTAACTTCAACCGTTCTTCCATCTATAACGTGCTCATCCTCCAAAACCTTGTCTATAA CAGATGGATCGGAAAATGTAACAAATCCAAATCCACGAGGCATCTTAGTATGCTTGTCCTTCAT AATTACAGAATCAGTTATAGCCCCATACTTCTCAAAATGCTTGGAGAATGATT
Genomic sequence	CTGCTTTCCACCAAGGTCACGCATTCTTCCCTCTGATATAACCCTTTCCACAGAATCCTCACTT TCAAAAGTGACAAAACCAAATCCTCTAGAACGCCCAGTGCTATGATCAAGCATTATTTGATGTT CAACAATCTTACCATATGGGGAGAAGTGCTCCCTCAACTCATCTAAAATTTAATATCTTGTCAG TTTTCATTGTAACTACAAATCGTTGAAGATTTTTATCTGTAAGTCTAATAAGTACCTTCAGTTA GTGATGAAGGTAATCCACCAACAAAGATTTTCCTTGTCTTTGGACCATCTTTTGATGACATTTC TTCCCTTGGGACTGTCCTTTTAACTTCAACCTGAACAAATAAAAGTTAAGCAAGATAAAGAGAA GCCAAGATAAACCCAAAGTGCGACTTTGCAAAAGAGTGTCAACTGTAGACTGAAGTCCCACGTA ACGGCTGATCTAAATCAAGATGTCCTACCGTTCTTCCATCTATAACGTGCTCATCCTCCAAAAC CTTGTCTATAACAGATGGATCGGAAAATGTAACAAATCCAAATCCACGAGGCATCTTAGTATGC TTGTCCTTCATAATTACAGAATCAGTTATAGCCCCATACTTCTCAAAATGCTTGGAGAATGATT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003763* osi_circ_012731 						
					
						PMCS
						0.463369076

Conservation Information
Conserved circRNAs	osi_circ_003763* osi_circ_012731
PMCS	0.463369076

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6786303-6786318(-)
						
						Potential amino acid sequence
						
							MKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGG
LPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQ
NHSPSILRSMGL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	6786303-6786318(-)
Potential amino acid sequence	MKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGG LPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQ NHSPSILRSMGL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0221500_circ_g.2

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