Detail information of Os10g0563700_circ_g.1


General Information
CircRNA Name Os10g0563700_circ_g.1
ID in PlantcircBase osa_circ_008028
Alias NA
Organism Oryza sativa
Position chr10: 22260161-22260209  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os10g0563700
Parent gene annotation Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I)
(NDP kinase I) (PP18). (Os10t0563700-01)
Parent gene strand -
Alternative splicing Os10g0563700_circ_g.2
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0563700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGCGGCCGATGACCTCGCCAATctttgaggtagaatcccttcttctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGAGGTAGAATCCCTTCTTCTCGAAGCGGCCGATGACCTCGCCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.117346939
Functional Information
Coding potential Y
Potential coding position 22260197-22260163(+)
Potential amino acid sequence MTSPIFEVESLLLEAADDLANL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017