Detail information of Zm00001d042262_circ_g.2


General Information
CircRNA Name Zm00001d042262_circ_g.2
ID in PlantcircBase zma_circ_001415
Alias circ622
Organism Zea mays
Position chr3: 157886972-157891707  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d042262
Parent gene annotation Retrovirus-related Pol polyprotein LINE-1
Parent gene strand +
Alternative splicing Zm00001d042262_circ_g.1 Zm00001d042262_circ_g.3 Zm00001d042262_circ_g.4
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d042262_T003:7
Zm00001d042262_T002:7
Zm00001d042262_T005:7
Zm00001d042262_T004:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATAAACTTGCACGAGAAATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTTTCA
GTTGAAATGGGCCTTAGAGAGCTTTCTTCATTGAAGggtagctgctcttggagaaggagtatca
ttagaggctcgcctcttgagcaggtttgttctgtgtttgaatgcacatgttttataaatccact
actgatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAGCTGCTCTTGGAGAAGGAGTATCATTAGAGGCTCGCCTCTTGAGCAGGTTTGTTCTGTGT
TTGAATGCACATGTTTTATAAATCCACTACTGATCATGACAAACATGTGCACGTATGTTGGCAG
GAAGGAAGCAGCACTTAAACAGAGGGAGGTTAGTTTTCTTCTTGTGTTCTGCTATAGGTTGCTG
TCATTCATATGTTATCATACTGCTTGTTTAGCCAATATTATGCATATTGTATCAACTGTTAGAT
CTAAATTGTTGTTTAATGTTAAAATGAGGATAATTCCTGTCCAGAACTTCAATTACAGTCTTAC
ACTCCGTGTTGTCACTAAAAAAATATTTTCAATTGTTCATGCTAAATACTTACTTCAAAGTTTC
ATTTGAAAGCACATGAATATCAGGATATGTATTAAAGCTGTTATAAACTAAATAGATGCAGATA
AACTTACTTATCCCCTAACTGCACTTTGATGCTAACTTTGTAACTCTTCATCGACACTTCATTC
ATCCTCAGGCTGCGCTAAAAGCTGCAAGAGAATCAAAGGATGGCAGAGATGGGGAAGTAACAAC
ACTAAGGCAAGAACTTGAGGTAATTATTATTTTGACAAATTTAATGTCGAAATCTTTGTTGTAT
ATGCTGCTTTATTTGACTCCTATTGTTCACTTATCATGTTTTGAATAGTCTGCCAAAGAAGAGG
TTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAGTCTGAAACGAAGGCTCTCCGATCTATGAC
TCAGAGAACGGTCTTAACTCAAGAAGAAATGGTTAGTCTGATTACTGCTTCATACTCCTCTTGT
TTTAGTGATATGGATTTTAATCTAGTTAGAACTTTATAGGAGGAGGTTGTCCTAAAAAGATGCT
GGCTTGCACGCTATTGGGGCTTAGCAGTTCAATATGGTAAGTTTCCTGATAAATCTTAATGGAG
AAGTCTTGAACTTTTTTCTGATTGTACTAACTATTCACTAGACATTTAGAAAGGATGGGCTTGT
TGTGTATAATTGACGGCAAACATTCCATTTGCACGCACACTATCATTTTCCTCTCTTGAAAGGC
AGCTAAATAGCTTATTTAGTATCTTGATCGACAAGAGCCTTAAAGATGGGGTAGTAGATGTTAA
GAGGGTAGGAGATAGAATCATCCTAGTCAAGCTGGTCATTGGGGACTTGGTTCTCAATGTTATC
AGCGCGTATGCTCCTCAAGTAGGCCTTAATGAGAACTCAAAGAGGGAGTTCTGGGAAGGCCTGG
AGGACATGGTTAGTAGTGTGCCAGTTGGCGAGAAGCTCTTCATAGGAGGAGATCTCAATGGCCA
TGTGGGTACATCTAGCACCAGTTTCGAGGGTGTGCATGGAGGCTTTGGCTTTGGGACTAGGAAT
CAAGAAGGAGAGGAAATCCTGAACTTTGCCCTAGCCTATGACATGTTTATAGCAAACAGTTTCT
TTAGGAAGAGGACATCCCACCTGGTGACCTTCAGTAGTGGCCAACACACTAGCCAGATTGATTT
CGTCCTCTTGAGAAAAGAGGACATGCATGCCTGCTTAGATTGTAAGGTTATACCTAGAGAGTGT
GTGGTAACCCAACATAAGCTTGTCGTAGCTGACTTCCGTTTTGAGATTCGTTTACAACGGAATA
AGCATAACAAGGTCACTAGAACAAAGTGGTGGAAGCTTAAAGGGGATGTGGCCCAAACTTTCAA
GGAGAGAGTTATCGAGGAGGGCCCTTGGGCAGAAGAGGGAGACATAAATATCATGTGGAGGAAG
ATGGCGGTGTGCATCCGAAAGATAGCTTCAGAAGAGTTTGGGTTGAGTCAAGGAAACAGAAGGG
AAGTTAAAGACACTTGGTGGTGGAACGAAGATGTCCAAAAGGCTATCAAGGAGAAGAAAGATTG
CTACAAACGCTTACATCATGACAAGTGTGCGGAAAACATAGAGAAGTATAGGATAGCGAAGAAG
TCTGCAAAGCGAGCAGTTAGTAGAGCCCGGGGTCAAGCCTTTGACAACCTTTATCAACGGTTGG
ACACAAAGCAGGGAGAAAAGGATATCTATAGGATGGCCAAGATTCGTGAAAGGAAGACAAGGGA
TGTCAACCAAGTCAAATGCATCAAGGATGAAGCAAACCAACTATTAGTGAAGAATGAAGAGATC
AAGAACAGATGGAAGGAGTACTTCAACAAATTGTTCAATGGAGGGAATGAGAGTTCTACAATAG
AATTGGACGAACCATTCGATGACAACAACAGGGGTTTTGTACGAAGGATACAAGAATATGAAGT
TAAGGAGGCGCTAAAAAGGATGAAGGTAGGAAAGGCGATGGGCCCTGATGGTATCCCTATCGAG
GTATGGAGATGCCTTGGAGACATAGCGATAGTATGACTGACTAAGCTTTTCAACACCATCTTTC
GGACAAACAGAATGGCCGACGAGTGGCGGCGGAGTACATTAGTACCAATCTTCAAGAACAAAGG
AGATGTTCAAAGTTGTACTAATTACCGTGAAATTAAGCTCATGAGCCATACAATGAAGCTATGG
GAGAGAGTCATTGAACACCGCCTGCGAAAGATGACGAGCGTGACCCAAAATCAGTTTGGTTTCA
TGCCCGGGAGATCAACTATGGAGGCCATTTTCTTACTAAGGCAACTTATGGAGAGATTCAGAGA
ACAAAAGAAAGACCTGCATATGGTCTTTATAGACTTGGAGAAGGCTTATGACAAAGTACCTAGG
AGTGTAATGTGGTGGGCCTTGGAAAAACACAAAGTAGCAACAAAGTACATTAATCTTATTAAAG
ATATGTACACTAATGTTGTGACAAGTGTCCGAACAAGTGATGGGGACACCGATGACTTTCCAAT
TAACATAGGACTACATCAAGGGTCGGCTTTGAGCCCTTATCTTTTCGCTTTGGTGATAGATGAG
GTCACAAGGGACATACAAGGAGATATACCGTGGTGTATGCTTTTTGCCGATGATGTGGTACTTA
TTGAGGAGAATAGGAGTGGTGTTTCGCAAAAGTTGGAATTGTGGAGGCAGACGCTGGAAGCAAA
AGGTTTTAGGCTTAGTAGGTCTAAAACGGAATATATGAAGTGTGATTTCAGTGCCATGGGGTAT
GAAGATGGCGATGTTAGTCTTGATGGGCAAGTGGTACCCAAAAAAGACACTTTTCGTTACTTAG
GATCAATGCTTCAGAAGGATGGAGACATCGATGAGGATGTCAGTCATAGAATTAAAGCTGGATG
GTTGAAGTGGCGGCAAGCGGCGGGTGTCTTATGCGACCCCCGGGTGCCACACAAACTAAAAGGC
AAATTCTACAGGACAGCAATCCGGCCGACTATGTTGTATGGAGCAGAATGTTGGCCCACTAAAA
GACGACATGTCCAACAACTATGCGTAGCAGAGATGCGTATGTTGCGCTGGATATGTGGCCACAC
AAGGAGAGACCGAGTCCGGAATGATGATATACGAGAGAGGGTAGGAGTGGCGCCAATTGAGGAG
AAGCTTATGCAACATCGTTTGAGATGGTTTGGACATATCCAACGAAGATCTGAGGAGGCACCAG
TGCATATCGGAATAATTAGGCGTCCCGAGAATGTGAAGAGAGGTAGAGGTCGACCAACCTTGAC
GTGGACAGAGGCTGTGAAGAGGGACCTGAAGGAGTGGAATATTGATAAAGAGCTCGCCGTGGAT
AGGAAGGGGTGGAAGTGTGCGATTCACGTGCCAGAACCTTGATTTATAGTTTCGCTTTTCCTCT
TTAATCGTTTGACCTTTTCTTGTGCCCATTTAGATCTTGCTGGTTCTTGTGGGTTTTATCTCTT
TTATGTGTTTCCCCGTTTCGTCGTTTTTCGGTTCTCCTTTGCCTTTGTTTCCCCTTTTTTTTTC
TTTGGGGGTTGAGCTCTGAGGTTTTCATACGGGGTTTCATCTCTAGCCTACCCCAACGTGCTTG
GGACAAAAAGACTTTGTTGTTGTTGTTGTACTTTATTGGAAAATTTCAACAAGATACATTGTGA
TGGGTCTTCTATCCACTCATCCATTCATGATGTTATTATGGTGGATACTGGATATCAACAAACG
ATAAATGCTCTTAGTATAGAACAAGATACAACATTGTATGTCAGTGTTAGTCTTATTATGGTGG
CATAGGCGCATAGCTTGTCTCTCAATGCTCAGGGTTAGTCTTCACACAAAGCCTTAGCCAACCT
GGTTGGCCTTAGTACTCTACGATTATGGTTTGGCCCTTGTCTATTGGCAACCAAAAAGAAATTG
GGCGTTGTCTGAAAAATGCACAGTATGACCTGCCTGCATCAGTGGCACTTAACTGCTGATATTT
TGTTACCCACCTTATTCTTGATTTTCTGATGATTAATTAATCAACTTCAAGGTGTGTATCCCGA
AATTGCGGTATCAAAGCATGAACATTGGTCATCATTGGCTCCTCTTCCTCTTGAGGTTGTTCTT
TCCGCCGGTCAAAAAGCTAAGGAGGAACCTCGAAAACAAGGCAAGTTTGCATCCTTAATCCTTA
TTATATTTAAGCTGTAGATTTTAGTTATTCCATGCACCCCAATTAAATAATTGCTTCAAATTTA
TTCATGTAGGTGACAATGTTCAAGGGAGAAATAAACTTGCACGAGAAATGAGTGATGTAATGGG
AGAAGGCAATATAGAGAGCATGCTTTCAGTTGAAATGGGCCTTAGAGAGCTTTCTTCATTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.124514824
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b