Detail information of BGIOSGA016691_circ_g.2


General Information
CircRNA Name BGIOSGA016691_circ_g.2
ID in PlantcircBase osi_circ_005584
Alias 4:23404880|23405080
Organism Oryza sativa ssp. indica
Position chr4: 23404880-23405080  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA016691
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016691_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAATTTTAGATGTTCACAGAAACTATTTGTTTGAATGTGAGTGCTTTGAGTAGGATAGTACT
CTTGGGTGTTGGAATTGTGCATGCTTGCTTTTCAACataatatcagttagctcaccttggtttc
tgatgcgttgatgttccagtaaaatagtgtgtttaatctgcataaaccttgagtttgccaaatg
ctcagtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAATATCAGTTAGCTCACCTTGGTTTCTGATGCGTTGATGTTCCAGTAAAATAGTGTGTTTAA
TCTGCATAAACCTTGAGTTTGCCAAATGCTCAGTTATATCAATTTTAGATGTTCACAGAAACTA
TTTGTTTGAATGTGAGTGCTTTGAGTAGGATAGTACTCTTGGGTGTTGGAATTGTGCATGCTTG
CTTTTCAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021