Detail information of 2_circ_ag.4


General Information
CircRNA Name 2_circ_ag.4
ID in PlantcircBase ath_circ_016051
Alias At_ciR1556
Organism Arabidpsis thaliana
Position chr2: 13665418-13670133  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_ag.2 2_circ_ag.3 AT2G32170_circ_g.1 AT2G32170_circ_g.2 AT2G32170_circ_g.3
Support reads 7/7
Tissues leaf/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAAAGGTTAACATTTTGTGAGCAGTGCAGGAATAACAGAAGGTTTCTCTATGTGTGGTGGTG
ATTTTGTTGAAGTATACAATGAATCAAGTCATGCAGgaatgtgggatgcagttgtgacttgctt
tttcattgacacggctcataacatcatcgagtacatcgaaaccatatccaagattttaaaggat
ggaggagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATGTGGGATGCAGTTGTGACTTGCTTTTTCATTGACACGGCTCATAACATCATCGAGTACAT
CGAAACCATATCCAAGATTTTAAAGGATGGAGGAGTACGTAATTTCCTATACGTACCCTCCTTT
CCAACGTCTTTGATATTTCATCACTCGCCTATCTAAATTAATGAATTTATCCATCAGGTTTTGA
TAAATCTAGGACCTCTGTTGTATCACTTTGCAGACGAGCAGGGCCTTGAAAATGTAAGCATTGG
AATTGTCACACAATCTCTCGCTAGATAAATAAATTTGATATAACAATAATATATCTTACTTGTT
TCTCCTTAGGAAATGTCGATTGAGCTAAGTTTGGAGGATGTAAAGAGAGTTGCTTCACATTATG
GGTTTGAGATGGAGGTAAATCTACACAATATAATGACAATGACATTTGCCTGTCAGAAATAAAA
CATCTCATGATGCATGTTCTTCCTCACTTATATGAGTGGTTGTCCTAACAATATTTGCAGAAAG
AAAAAACAATAGAAACAACGTACTCTACAAACCCCCGGTCTATGATGAAGGTCAGATTTTTTTC
CATGTCTTTGGATTTGTGGTTGACTTTTGGATCCAGAGATGGGTTTAATTTGTGCATGATGTTG
TGTGTGTCTGTTGCAGAACCGATACTATCCTGTCTTCTGGACAATGAGGAAGAAGTGTGCTATA
ACAACAACTTAACCAAATATTCCTCAAAACTATATATGTTTTATTCTGTTGCATTTGTTTTTAA
GGAATTAACGGGTCCAATCTAAAACACATACTATTTCTTTTGTTGTTGCAAAATAATGAAACTG
TGTTTTTCGGTTGATGTTTGAAAACCAAGTAACCAACACTCAAAGCTAAACAAAACCTTTGGCC
TGTGGGCACAAAGCTAAAATTTTATTATTTTCTCGGCACTACTACGCAAATAGGCTAACTAAGG
CCCATTAAATAATATGAGGCCCAACTTGAAAAAGACTCGTTTCTTGTTACTAATAACCTTTCCG
ATGAAATCAACTCCAAAACCGAAGAGCCACCACCATGGTTTCGCCGTCAGAGATGACGGAGACG
GCACCGGCAATTATGACAACGGAAAGCGAAAGGATAGAGAGTTCGAGGGAACTCGTGGATAATG
AAGAGGAGGAGAAAATACGCCGTCAGAAGAAGCTCGAAGAAGCTCTCGAAGCCAAATCTCTTCG
CCGCATTATCAGTGCTTACCTCAAGTATCTCACTTTTCTCAGTCCTTTTAAACACTCATCCTTC
TCTGGATTTTACATCATTTCATAGGCACTGTGTTTTCTGATTCTAAAGATAATTCTACTGATTG
GGAATTTCAAATCACAATTCTAGTTTCTAGATTTTACTTTTTATCTTTTTCTTTAGCATTTTGG
TATTGGTTCTGCATCGTTGACCTTTGGAAATGTTTACAGTTACCCAGAGGCTTCGGAAGAGGAT
TTGAAAAGATGGGAAAGATCATATCGGAAGCTGTCTCCTGCACACAAGGTTATTTTTTGCCTCA
TTTCTAGCATTGAGAATAGTAGTAGCATGTTCTGTAACAGTTAAGAGATTACCAAACGATTTCA
AGTCAAGTTGATTTTTTGTCGAATCTTCTTTGTTTGCTTATATAATAGAACTAATGGTTTCAGT
GATGAATTTTTGTCCTTTGTGTAGGCATTGGTACCCCATTACCCTATGAAGTTTCAGAGATTAA
GAAGGTGAAATCTTTAGTCAGTTAAATATTTCACTTATCATCTTGTAGTCTTATTAAATGTCGC
GATTCACTTGGATGATATTCAGAATTTTTTATTTCCATCATAGTTGCTTCGAGGTTTGCATTTG
ATTGCCTAAATTTTGTGTTCGGGTGTCATTTTTATGATATCCATGCTTCTTATAATTCTTCTTT
CTCATGCTTGCATACTAAACTCGATAGTATGCAAGATTGAACTTGACTCATTTCTATCCTGTCT
GTACTTGTCCCAGACACCCTGCACATAGTGTTTGTTGAAGTGTTAGTAAGTTGTTGGATTTTGT
TTGTTGCAGGTGTATATCGGCGAATTCATATTTCATATTTAATATGCTTCAGGTCAGTTGCAGA
CATTTCTTTTTCTAATTCCCTTGGTGTTTCATTTGCTTCAACTTATTTGATTATGTGATTCGTA
ACTTGACTTGAAATGCTAGAAAATCTACAGTTCATGTCAATTGTCATGTAAAAATGTAATTCAT
AATTACTTGGCAGGCTTTTGAGCCTCCTATAGACTTGAGTCAGGAACTTGATGGTTGTGAAGAC
TCAAATCTTGACTGCGCTCCACATGAGAGATACACTCTAGATGAAAGGCACGACTCTTCTTGTC
AGCCGGCCTTGACCAATAGTTGTACATATAAGGAAGAAAGCAAACACATTCGTGACCCAATAAC
AGGAGTGTCTATCGAGGTCAGATCAAGACATTGGAACTTTATCCTTGTCATTTAAAATCTTTAA
TTTATTTGTATAAATACAGGAGCTTCAGAGGAAAGAAGCTCATGATCATTCTCCCAAGGATGAC
TCTGCAGACACAAGAATCAACGATAAGACATGTGATTGTCATGAAGGCCAGTTAAATCATGACC
ATGGCAGTGTAATGCCAACTCATATACTCTTATACCTCAGTTCCGCCCAGAAAACGTTTTTGAC
TATGTTAGCTTTGCGCAGATTCTTTAGTTATTGTATCAGTTAAGATCTTTGGTGGGATCATATG
AGTATTTCCTGGCATTCTAGATCAAATGAATTTTAACTGTTAGTCTATATTAAGAAAGCATTCA
ACTGTCAAGCATAGGCTTGTTGTATATATTTTTGCATTATACTTCATTTATGACTATAAAATTG
TCATAATTCATGTGATTTTTCTAATTCTAATGTTCCTCTTTTCTTTCTTAGGTATCATTTTCAT
CCCATGATTGGTTGGATTCATCGTTACAGACACATGTTCCTCTGGTTGATGTAGATAAGGTATG
GTTTTTCAAATTTACTATGGCTGGTGATATTCATTTTCCTCAGTCCTAGCCTCCTAGGTAATCA
TAATTGTATAAGAGCTCTTGTAGCGTGAGACAAAGATCATTATGTGTCATGTTAGAACTTATTC
TCAATCTCTATTAGTTCCATTAGGCAGTTTGGTAAGTTATGAGGGTTGGTTTGCTCATGTAGCT
TTGCATGGGGAGGTAAATCCTGTTGAGCTTAAGTGCACCTTCTTACACGTATGCATATGCACAT
GATAGAGGTGACACACACACCAGTACAATTGCATATATTTGTTGCGATGTTGTGTGTATTTCTC
ACCAATCTATACTTTAAAATGTTCATGATTTTGTTGTATTCTAACACAGGTTCGTTGTATTATA
AGGAATATTGTTCGAGACTGGGCAGCAGAGGTAGCCATATTTTTGTTTGTCATTTTCTTCTGAC
AATGATGTGTGGAAATCCTTTCTTTAATCTTAAATCACAACCAAAGTTTTAGTGGTATATTCTT
TTTACTTGTAGGGTCAGAGAGAACGAGATCAATGCTACAAGCCTATCCTTGAAGAGCTTGATTC
CTTGTTTCCTGACCGTTTGAAGGAGAGGTACGCCGTGTTACTCCTATTTGTTTTTGACTTTTGG
GTTTATAGAGACTTAACAAGAGAGAAACAGAAAATCGGATAATGGTTTTAGCTCCTTCTTAGTA
CCAGACGACTAGTATTTGATTAGTACCTGCTGCATTCACTCTCCTTACAAAGTTGACTATATGA
TATGCAGCACCCCTCCTGCCTGTTTAGTCCCTGGTGCTGGACTTGGACGTCTGGCCCTTGAAAT
TTCTTGTCTAGGTATGCAATGCGGAAGTAATTTTTATTGTATACTTTATGATAATAAGGTATAT
GACAATTATGTGCACTGGAGCAGGTTTCATAAGCCAAGGAAATGAATTTTCATACTACATGATG
ATATGCTCAAGTTTTATTCTGAATTAGTAAGAATTTCTTATTCTCTTGAATACATTATCTTTTT
ATATTCCTTACGTGTCCGCCTCAAAGAGCCTCTCTGTCCTCCTTTTCTAGGTTGAGATATTTGG
TCACCCATGTTGTTTCAGAAAATAGAAATCAGTTTATCCACAATTCAGTAATTCACATCTTTTA
CTTTCACATCAGCCAACCTCTAAATTTCAAACTGTTTTTCTAAATTGCTCTTGGAGAGTCCACA
ATTTACTTTCTTCTCTGATGTATCTCTAAATTAAGTTGAGGTAGTTTCTTACATTTGGTCCAGT
TTTGAGTTTTGCTCAGCTTGGTTTTTGTTTTCATCAGTACACAAGTCCCTGGTGAGTGGACAAT
ATACCCCTGGATACACAGCAACTGCAATTCGCTCTCGGACAATGATCAGCTACGCCCTATTGCG
ATTCCTGATATTCATCCTGCAAGGTATGCCTTATCGAACAACAGTAGAACTGGCCTATGGTTTT
TGGAATGTGTTGGTAGTTTTAGGTATAAAGGCTCATCTGTTTTTTTTTGTGAAACATAAGGGAA
CTCAATTGAAAGGGATTAGGCAACTTGTATTGGTGATTTCGTGTAGCTACAATCATTTAAACGT
CACTTTACTAAAAAGGTTAACATTTTGTGAGCAGTGCAGGAATAACAGAAGGTTTCTCTATGTG
TGGTGGTGATTTTGTTGAAGTATACAATGAATCAAGTCATGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.305015837
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017