logo





circRNA ID
AT1G01090_circ_g.1
Alias
ath_circ_000016, 1:48168-48440
Organism
Arabidpsis thaliana
Position
chr1: 48168-48440  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
Pyruvate dehydrogenase E1 component subunit alpha
Parent gene strand
-
Alternative splicing
Splice junction sequence  
GGCAGTTTATAGAGAGCAGCCATGTTGAGACACTCGAAGAACTGTCCGTTGTTACAAGTTCCAT
CTCCGAAAAAGGCGACAGTGACATCATCACAATCCTctctagtgacagcttctttagcgacttc
cctgaccttcaagacatccataccgtcaacatgaacaccaggcatcccaaatgcaggacctttc
ttccaaat
Support reads
3
Tissues
root
Exon boundary  
No-No
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTCTAGTGACAGCTTCTTTAGCGACTTCCCTGACCTTCAAGACATCCATACCGTCAACATGAAC
ACCAGGCATCCCAAATGCAGGACCTTTCTTCCAAATCTCGGGGTCAGAAGTGGCTCTCAAGTGA
GACATCCCAATGGCCCACAAGTTATTCTCGACAACAAAGATAATAGGCAGTTTATAGAGAGCAG
CCATGTTGAGACACTCGAAGAACTGTCCGTTGTTACAAGTTCCATCTCCGAAAAAGGCGACAGT
GACATCATCACAATCCT
Number of exons covered
AT1G01090.1:1
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

Supported by   nsfc    zju