Detail information of AT1G01090_circ_g.1


General Information
CircRNA Name AT1G01090_circ_g.1
ID in PlantcircBase ath_circ_000016
Alias 1:48168-48440
Organism Arabidpsis thaliana
Position chr1: 48168-48440  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G01090
Parent gene annotation Pyruvate dehydrogenase E1 component subunit alpha
Parent gene strand -
Alternative splicing AT1G01090_circ_g.2
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G01090.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCAGTTTATAGAGAGCAGCCATGTTGAGACACTCGAAGAACTGTCCGTTGTTACAAGTTCCAT
CTCCGAAAAAGGCGACAGTGACATCATCACAATCCTctctagtgacagcttctttagcgacttc
cctgaccttcaagacatccataccgtcaacatgaacaccaggcatcccaaatgcaggacctttc
ttccaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTAGTGACAGCTTCTTTAGCGACTTCCCTGACCTTCAAGACATCCATACCGTCAACATGAAC
ACCAGGCATCCCAAATGCAGGACCTTTCTTCCAAATCTCGGGGTCAGAAGTGGCTCTCAAGTGA
GACATCCCAATGGCCCACAAGTTATTCTCGACAACAAAGATAATAGGCAGTTTATAGAGAGCAG
CCATGTTGAGACACTCGAAGAACTGTCCGTTGTTACAAGTTCCATCTCCGAAAAAGGCGACAGT
GACATCATCACAATCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.427293458
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020