Detail information of AT1G50140_circ_g.14


General Information
CircRNA Name AT1G50140_circ_g.14
ID in PlantcircBase ath_circ_006594
Alias NA
Organism Arabidpsis thaliana
Position chr1: 18577418-18577554  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, CIRI-full
Parent gene AT1G50140
Parent gene annotation P-loop containing nucleoside triphosphate hydrolases superfamily
protein
Parent gene strand -
Alternative splicing AT1G50140_circ_g.10 AT1G50140_circ_g.11 AT1G50140_circ_g.12 AT1G50140_circ_g.13 AT1G50140_circ_g.15
Support reads 2
Tissues whole_plant
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT1G50140.4:1
AT1G50140.5:1
AT1G50140.3:1
AT1G50140.1:1
AT1G50140.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCGTCGTCAGTTCCTTCTATTTTTGTTTCACTACTACTAGTATCATCATTGTCCCCATCGGTT
TCTTcttctcgatatcctctatgtcggccccaagtttcttgaggacttccttagaaatctccaa
atatctttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 137
Transcript exons: 18577418-18577554
CTTCTCGATATCCTCTATGTCGGCCCCAAGTTTCTTGAGGACTTCCTTAGAAATCTCCAAATAT
CTTTCTTCGTCGTCAGTTCCTTCTATTTTTGTTTCACTACTACTAGTATCATCATTGTCCCCAT
CGGTTTCTT

Genomic sequence CTTCTCGATATCCTCTATGTCGGCCCCAAGTTTCTTGAGGACTTCCTTAGAAATCTCCAAATAT
CTTTCTTCGTCGTCAGTTCCTTCTATTTTTGTTTCACTACTACTAGTATCATCATTGTCCCCAT
CGGTTTCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.124086981
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017