Detail information of Os10g0405100_circ_g.1


General Information
CircRNA Name Os10g0405100_circ_g.1
ID in PlantcircBase osa_circ_006760
Alias Os_ciR3286
Organism Oryza sativa
Position chr10: 13825451-13826469  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0405100
Parent gene annotation Similar to serine/threonine-protein kinase NAK. (Os10t0405100-01
);Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7
.1.-). (Os10t0405100-02)
Parent gene strand +
Alternative splicing NA
Support reads 3/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0405100-01:3
Os10t0405100-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGGTCTGGCAAAAGCAGGCCCAACTGGGGATAGAACCCATGTTTCCACACAAGTCATGGGTA
CCCGAGGTTATGCAGCTCCAGAATATGTTGCAACAGatccatcaaaagctgctagcaagacaac
ctattcatcttacccttcaactacaaaaagcggttcatcttggactgtaccttcctataaggat
cgtagcga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 747
Transcript exons: 13825451-13825800,13825879-13826014,13826111-13826247,13
826346-13826469
ATCCATCAAAAGCTGCTAGCAAGACAACCTATTCATCTTACCCTTCAACTACAAAAAGCGGTTC
ATCTTGGACTGTACCTTCCTATAAGGATCGTAGCGACCTTCCTACTCCTAGGACAGAAGGAGAA
ATTTTATCATCGTCAAATTTAAAGGCATTCACACTGAGTGAACTCAAAAATGCAACAAAGAACT
TTAAGCCCGACAGTCTCCTTGGGGAAGGAGGATTTGGCTATGTCTATAAAGGTTGGATCGATGA
GCAAACTCTTGCTCCTGCAAGGCCAGGGAGTGGTATGGTTGTGGCCGTCAAAAAGTTAAAACCA
GAAGGTTTTCAGGGTCACAAGGAGTGGCTGACAGAGGTTGACTACCTTGGCCAACTTCACCATG
AGAATCTTGTTAAACTCATTGGTTATTGTTCAGATGGTGATAACCGACTTCTGGTGTATGAGTA
CATGCCTAAAGGAAGCTTGGAGAATCATCTATTTAGGCGTGGTGCAGATCCTTTATCCTGGGGA
ATAAGGCTCAAAGTTGCTATTGGGGCTGCTAGGGGTTTATCATTTTTGCACGATGCTGAAAATC
AAGTTATATATCGTGATTTCAAGGCATCAAACATTCTCCTTGACTCGGAGTTCAACGCAAAGCT
TTCAGACTTTGGTCTGGCAAAAGCAGGCCCAACTGGGGATAGAACCCATGTTTCCACACAAGTC
ATGGGTACCCGAGGTTATGCAGCTCCAGAATATGTTGCAACAG

Genomic sequence ATCCATCAAAAGCTGCTAGCAAGACAACCTATTCATCTTACCCTTCAACTACAAAAAGCGGTTC
ATCTTGGACTGTACCTTCCTATAAGGATCGTAGCGACCTTCCTACTCCTAGGACAGAAGGAGAA
ATTTTATCATCGTCAAATTTAAAGGCATTCACACTGAGTGAACTCAAAAATGCAACAAAGAACT
TTAAGCCCGACAGTCTCCTTGGGGAAGGAGGATTTGGCTATGTCTATAAAGGTTGGATCGATGA
GCAAACTCTTGCTCCTGCAAGGCCAGGGAGTGGTATGGTTGTGGCCGTCAAAAAGTTAAAACCA
GAAGGTTTTCAGGGTCACAAGGAGTGGCTGGTACGTCTGCTATAAACCAACTTTCTAGGTTTCT
CTGAGGTGCTACAATGTTTCTTAATTGTGATTGATGTGCTGCAGACAGAGGTTGACTACCTTGG
CCAACTTCACCATGAGAATCTTGTTAAACTCATTGGTTATTGTTCAGATGGTGATAACCGACTT
CTGGTGTATGAGTACATGCCTAAAGGAAGCTTGGAGAATCATCTATTTAGGCGTATGCATTTAA
CTCTACCACACTATTTTCTAAATATATACGGGTTCAATATCTTAAATTTGGCAGCACATTAAAT
GGAATTTTCTGTTATTTTAGGTGGTGCAGATCCTTTATCCTGGGGAATAAGGCTCAAAGTTGCT
ATTGGGGCTGCTAGGGGTTTATCATTTTTGCACGATGCTGAAAATCAAGTTATATATCGTGATT
TCAAGGCATCAAACATTCTCCTTGACTCGGTATACATGAAAATAGCTACTCATTCTTGTCCTTC
GAAAGTTTGACCTTTTGCAAATGTTTTTACTTTAACTTTTGTTTCCTTTTTTCACCATTATAGG
AGTTCAACGCAAAGCTTTCAGACTTTGGTCTGGCAAAAGCAGGCCCAACTGGGGATAGAACCCA
TGTTTCCACACAAGTCATGGGTACCCGAGGTTATGCAGCTCCAGAATATGTTGCAACAG
Conservation Information
Conserved circRNAs osi_circ_002805* osi_circ_008395
PMCS 0.532057188
Functional Information
Coding potential Y
Potential coding position 13826190-13825597(+)
13825742-13826466(+)
Potential amino acid sequence MLKIKLYIVISRHQTFSLTRSSTQSFQTLVWQKQAQLGIEPMFPHKSWVPEVMQLQNMLQQIHQ
KLLARQPIHLTLQLQKAVHLGLYLPIRIVATFLLLGQKEKFYHRQI*(+)
MVVAVKKLKPEGFQGHKEWLTEVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLF
RRGADPLSWGIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPT
GDRTHVSTQVMGTRGYAAPEYVATDPSKAASKTTYSSYPSTTKSGSSWTVPSYKDRSDLPTPRT
EGEILSSSNLKAFTLSELKNATKNFKPDSLLGEGGFGYVYKGWIDEQTLAPARPGSGMVVAVKK
LKPEGFQGHKEWLTEVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLFRRGADPL
SWGIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVS
TQVMGTRGYAAPEYVATDPSKAASKTTYSSYPSTTKSGSSWTVPSYKDRSDLPTPRTEGEILSS
SNLKAFTLSELKNATKNFKPDSLLGEGGFGYVYKGWIDEQTLAPARPGSGMVVAVKKLKPEGFQ
GHKEWLTEVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLFRRGADPLSWGIRLK
VAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTR
GYAAPEYVATDPSKAASKTTYSSYPSTTKSGSSWTVPSYKDRSDLPTPRTEGEILSSSNLKAFT
LSELKNATKNFKPDSLLGEGGFGYVYKGWIDEQTLAPARPGSGMVVAVKKLKPEGFQGHKEWLT
EVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLFRRGADPLSWGIRLKVAIGAAR
GLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTRGYAAPEY
VAT(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017