Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os10g0405100_circ_g.1 |
ID in PlantcircBase | osa_circ_006760 |
Alias | Os_ciR3286 |
Organism | Oryza sativa |
Position | chr10: 13825451-13826469 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os10g0405100 |
Parent gene annotation |
Similar to serine/threonine-protein kinase NAK. (Os10t0405100-01 );Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7 .1.-). (Os10t0405100-02) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 3/2 |
Tissues | root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0405100-01:3 Os10t0405100-02:4 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_002805* osi_circ_008395 |
PMCS | 0.532057188 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
13826190-13825597(+) 13825742-13826466(+) |
Potential amino acid sequence |
MLKIKLYIVISRHQTFSLTRSSTQSFQTLVWQKQAQLGIEPMFPHKSWVPEVMQLQNMLQQIHQ KLLARQPIHLTLQLQKAVHLGLYLPIRIVATFLLLGQKEKFYHRQI*(+) MVVAVKKLKPEGFQGHKEWLTEVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLF RRGADPLSWGIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPT GDRTHVSTQVMGTRGYAAPEYVATDPSKAASKTTYSSYPSTTKSGSSWTVPSYKDRSDLPTPRT EGEILSSSNLKAFTLSELKNATKNFKPDSLLGEGGFGYVYKGWIDEQTLAPARPGSGMVVAVKK LKPEGFQGHKEWLTEVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLFRRGADPL SWGIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVS TQVMGTRGYAAPEYVATDPSKAASKTTYSSYPSTTKSGSSWTVPSYKDRSDLPTPRTEGEILSS SNLKAFTLSELKNATKNFKPDSLLGEGGFGYVYKGWIDEQTLAPARPGSGMVVAVKKLKPEGFQ GHKEWLTEVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLFRRGADPLSWGIRLK VAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTR GYAAPEYVATDPSKAASKTTYSSYPSTTKSGSSWTVPSYKDRSDLPTPRTEGEILSSSNLKAFT LSELKNATKNFKPDSLLGEGGFGYVYKGWIDEQTLAPARPGSGMVVAVKKLKPEGFQGHKEWLT EVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLFRRGADPLSWGIRLKVAIGAAR GLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTRGYAAPEY VAT(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |