Detail information of BGIOSGA015738_circ_g.1


General Information
CircRNA Name BGIOSGA015738_circ_g.1
ID in PlantcircBase osi_circ_014464
Alias Chr04:244251_246217(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 224290-225597  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015738
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-TA
Number of exons covered BGIOSGA015738-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGTAAACACTAAACAGCAAAAAGGTACAAAATTTATGGCATTGCATCGCTTTTCATTGTTTT
GAAAGTATGTCTCTGTGAAATACTTTTCATCAAAGTccttcttctcaatgcctttgcaggatct
gagactgggagggccagttcagaaggtctagaccttgcacacagcatccgatcaaagaggttag
caacaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTTCTCAATGCCTTTGCAGGATCTGAGACTGGGAGGGCCAGTTCAGAAGGTCTAGACCTT
GCACACAGCATCCGATCAAAGAGGTTAGCAACAGGGTCTGTGACTGGCCTGCAAGGATCACAAG
AATGGCATATCAGATGTGGGATTAATTGTGACGATCTTTGCCAATGCACTAATGCAGTATCGCG
ATTAAAAAAATTACCGCATGGCATCCGGGAACAAGCTGGGGAAGGAGAAGTCATCACTTGAATC
ACCCTTAAGCCCTGTCAGTGGGTTCCTCTGGAAGTATCTCAGGTAAATCCAGCTGACATACATC
CCCGATAGCAGAGTTGGAAGGAAGTTAATGGAATCAGGTACAATGAAGGCCATGATAGTTGAGA
AGCATAGCACGAAGAATGGCATCCACTGCAATAGCAAGGGAAAAAGGAGAGAAGCTATGTAACT
TGTTGTGGAAGAAGTATTTATTAGCACACTACATGCTCAGAAATTGTATTTTATAGTAGTTCAT
CAGCATACCTTAGCCTTTATTTTCCAGAAAAAGCACATGGGGAGCTCAAGGTTTGGTAAAAGTT
GTTTCAGGCCAACAAGAAAGCCAGCAAGGGCACCATGGAAACCAGAAAGTGGTGTAACACTGCA
CAACAATCAAGATCAGATAGTGAGTACAATGCACAATTTTCAGTCAGTAATGTTACTAACCAAG
AAAGCATTATGTAAGGTGTTGACATGAATTACATTATGCAAACATAACCAACAGTAACCACAAT
ATGCCGAAATAAAAATATTTAATATCACGTATAGAAGTAATGGTATGATATTGTTATCCAGCGA
GCTAATGTGTAGAAGTTTGCATGAACTAAATATTCATTGCTTTTGAAGAAACTAACTGAATATT
CATATGAAAAGGTAATACGCAGGAAGCAAGAATGAATATTATTTCAATGACATAGTAGAAATAT
AATCTGTAGTAGTATAATAGCTATGTAAAAGTTAATTGATTGATGGTTAGAAACTTACAGGAAG
CTCTCCTTTCCAGTGACATAGTAGAGTGCAACAGCAAAGCAGAATGCAAGGACACCGCAGATGG
AGTTGACCAAGATGATAAACTTCAAGAATTCTTTGCGGCCCCACACTGGTTCGATATCCTTCCC
ACAGAAGAGAAGACCAAGGGAACTGCCGATAGCCTAAGGAAAAATAATAATAATCAAGAGTAAA
CACTAAACAGCAAAAAGGTACAAAATTTATGGCATTGCATCGCTTTTCATTGTTTTGAAAGTAT
GTCTCTGTGAAATACTTTTCATCAAAGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021