Detail information of AT5G15070_circ_g.5


General Information
CircRNA Name AT5G15070_circ_g.5
ID in PlantcircBase ath_circ_038363
Alias NA
Organism Arabidpsis thaliana
Position chr5: 4879594-4882545  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT5G15070
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing AT5G15070_circ_g.2 AT5G15070_circ_g.3 AT5G15070_circ_g.4 AT5G15070_circ_g.6 AT5G15070_circ_g.7 AT5G15070_circ_g.8 AT5G15070_circ_g.9 AT5G15070_circ_g.10 AT5G15070_circ_g.11 AT5G15070_circ_g.12 AT5G15070_circ_g.13
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G15070.4:11
AT5G15070.2:11
AT5G15070.3:11
AT5G15070.5:11
AT5G15070.6:11
AT5G15070.7:11
AT5G15070.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAATGTCTTATCTTTTTCTCTAGGTTTCTCTGGTAAGTAAGGACTCTTCCATGTTGGATGGC
CTTGATAATGCCAGCAGTGAAATGGAAGCAGCTAAGgtgagatatccagttttacttacacctg
ctgagaaacaaatggcgagagaagtttgcattgcatttaggcaagcggtatgtggttattccag
ttatctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAGATATCCAGTTTTACTTACACCTGCTGAGAAACAAATGGCGAGAGAAGTTTGCATTGCAT
TTAGGCAAGCGGTATGTGGTTATTCCAGTTATCTGACTGTCATTGTGTCTTGCAGAGTTCTATC
GCCTCATAATTTTATATGTGCAACAGTAATAAGGAGACATGCCTGAGTCTCTCTCATAATGCTT
AGATTGGAAATTGTTGAGCTAACTCTTTTATTTTAATACATAAGAAAATAAATCAAGTAATTGT
AGATTACAAATGAACTGTTTTTAAATGTTCTCTTTCATATCTTCTCCACAATAGAATTAGACTT
AGTGTTAAAGTCTTGCTTCTGGTGTAGTTTGTTTGAAGGAATGATTACGAAATGTTGTTACCTG
GAAAAGTTGAAGATATTATTGTATAATGCATTAGTGGAATTATTTTCATGTCTGCAGGTTTGCG
GTTTTGATCTCCTACGATCTGAGGGAAGTTCATATGTTTGTGACGTAAATGGATGGAGTTTTGT
GAAGAACTCCTATAAGTGAGACACTAATCTGGACTTCTATTTTTCTTCTCAGTTCTGCTTATTG
TTTCAGTTATATCTTCGCAAGGAAAATCACAAATCATTGTATATTTGCTGCCGCTGACCTAGCT
CTATAGTTAATAAATTAATCTCATTGAGTGAATTTCAATTCTAGAGGTTTTTAGCAGCATCTTT
TGCCTTCTAAAAGATCGTACATTTTGGCATAAGCTAGTAGAGGCAGAGCTCATTGCTTATTATT
TGAGATAAACACTGTGTCATCGTCATATCCACTTTTGGAACTCTCAGTTTGTATTCATTTGGAG
TTTTAATCAGAAATGTCACCAGATCTCTTTCTCTGTAAGGTATTACGACGATGCTGCTTGTGTG
CTACGGAAAATGTTTTTGGATGCAAAGGCTCCTCATCTTTCTTCAACAATTCCTCCCATTCTGC
CATGGAAAATCAACGAACCTGTCCAATCTAATGAAGGTCTTACCCGCCAAGGAAGTGGCATCAT
CGGAACTTTTGGGCAGTCAGAGGAGCTACGCTGTGTCATTGCTATTGTTCGGCAGTATGTTTTA
GCATATGATCACCTGTCCTCTCTTAACTCCTCTCTGTTCACCCAGGCCCTGAGTTCTGTTTATC
TTCTCTTGACAGTGGTGATAGAACCCCCAAGCAGAAAGTGAAACTAAAAGTTACAGAGGAGAAA
CTGTTAAACCTGATGTTGAAGTACAATGGAGGAAAACCAAGAGCTGAGGTGAGAGGCTTGGGAT
TTTCCACCTTCAACTTTGCCCCGCCTATAGGGATTTTCTGATACCGTGTATTTTTTTTTTCCTT
TTTTACAGACAAAACTTAAAACTGCCGTCCAATTGCAAGATCTATTGGATGCCACAAGAATGTT
AATTCCTCGTGCAAGGTAGACCCCTAATAATGATCTTATAACTTGAGTTATGCTTGCAGTATTT
AAGCCTTTCCTTGCTTAAGTGGTACTCTGGAATACAAAAATTTTTTACTGATTAAGAGAACCAG
TGGATTCAAGAATTTCATGGATGAACTGAAAGAAATTTAACTTGAATGAGTGAGCTAACCAAAC
AGTGGCTTTCATATGTTAATTTTCTACTTGTTACAAATTCCTTTGCTGAACTGGACTTTTGTTT
ATGATCATCCCGGTAAAGCTTTTTCTGTATTGACGAATATGCTTCATTGACATTAACTAGTGAT
GTAATTCATGAGTACAATTTTAAATCTGGCAACTAACTTATTGTATTTATGTTTGATGTTTAGA
TCAGGTGAAAGTGATAGTGATGCAGAAGACCTTGAACACGCTGACAAGCTTCGGCAAGTTAAAG
CCGTTCTTGAAGAGGTTGTGTGCCTTCAAAATCTTATTTTTTCTTTCTTTTCTCTGAGCTATAT
CCATTTCGCAGTCCCATTGTATTGTTTATAGTCCTTGTAATTAGCTGTACAGTAACAGTTACAG
CCTGCAAACTCAGTCTCATGTTATAGATGTGTAAAATTTGCAGGGTGGGCATTTCTCTGGCATA
TACAGGAAGGTTCAACTGAAGCCGTTGAAATGGGTTAACGTACCAAAAAGTGATGGTGAAGGCG
AAGAGGAACGCCCAGTGGAAGCTCTTATGGTTCTGAAATACGGGGGTGTTCTAACTCATGCTGG
TAGAAAGCAGGTAACACTATATTTGTTAGCAGACGAGTATGTCAAATGCAGTGCAAAGTTCAGT
ACTGGTATTGGTAATAGTTAGTGTATGGCTACCTAACACCAGTGCAGGCAGTTGAGGAATTCAT
CTCTGATTTCTTTGATGTTTGCTTAATTTTTTCCACAGGCCGAAGAGCTTGGTAGATACTTTCG
AAACAATATGTATCCAGGTGACAACACATTACCTGCTTGATTTGTCCAATCATTTCATATTCTA
CCTTCCATATGTCTCATACAATTTTCTGAAACAGTCCATTGTAGTTGTGTTGATCAATATACAT
TTATTTCTAAGTGGTTAATGAAAAACTGGGGATATGCTTTCAGGGGAAGGTACCGGTTTGCTCC
GTCTCCATAGTACATACCGTCACGACCTTAAAATTTACAGCTCTGACGAGGGACGTGTTCAGGT
ACAACTTTCTGCCGATTTCGTATTGACGATGACCATTGAGCATTCAAATGTTCACTATATCTTC
TGGATATTCCTCATCGGTTGCACTGAGATATGATATGAATGTATGCAGATGTCTGCAGCTGCTT
TTGCCAAAGGCCTGCTTGACCTAGAAGGACAGCTGACCCCAATCCTGGTTTGCCATTTTCTTTT
ACCTAGCTAGTATAGTGCCTGGCAATGTCATAATCATTAAATGTCTTATCTTTTTCTCTAGGTT
TCTCTGGTAAGTAAGGACTCTTCCATGTTGGATGGCCTTGATAATGCCAGCAGTGAAATGGAAG
CAGCTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.115431908
Functional Information
Coding potential Y
Potential coding position 4879633-4882542(+)
Potential amino acid sequence MAREVCIAFRQAVCGFDLLRSEGSSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLDAKAPHLSS
TIPPILPWKINEPVQSNEGLTRQGSGIIGTFGQSEELRCVIAIVRHGDRTPKQKVKLKVTEEKL
LNLMLKYNGGKPRAETKLKTAVQLQDLLDATRMLIPRARSGESDSDAEDLEHADKLRQVKAVLE
EGGHFSGIYRKVQLKPLKWVNVPKSDGEGEEERPVEALMVLKYGGVLTHAGRKQAEELGRYFRN
NMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSML
DGLDNASSEMEAAKVRYPVLLTPAEKQMAREVCIAFRQAVCGFDLLRSEGSSYVCDVNGWSFVK
NSYKYYDDAACVLRKMFLDAKAPHLSSTIPPILPWKINEPVQSNEGLTRQGSGIIGTFGQSEEL
RCVIAIVRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKTAVQLQDLLDATRMLIPR
ARSGESDSDAEDLEHADKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVNVPKSDGEGEEERPVEA
LMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAA
FAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEMEAAKVRYPVLLTPAEKQMAREVCIAFR
QAVCGFDLLRSEGSSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLDAKAPHLSSTIPPILPWKI
NEPVQSNEGLTRQGSGIIGTFGQSEELRCVIAIVRHGDRTPKQKVKLKVTEEKLLNLMLKYNGG
KPRAETKLKTAVQLQDLLDATRMLIPRARSGESDSDAEDLEHADKLRQVKAVLEEGGHFSGIYR
KVQLKPLKWVNVPKSDGEGEEERPVEALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGL
LRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEM
EAAKVRYPVLLTPAEKQMAREVCIAFRQAVCGFDLLRSEGSSYVCDVNGWSFVKNSYKYYDDAA
CVLRKMFLDAKAPHLSSTIPPILPWKINEPVQSNEGLTRQGSGIIGTFGQSEELRCVIAIVRHG
DRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKTAVQLQDLLDATRMLIPRARSGESDSDA
EDLEHADKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVNVPKSDGEGEEERPVEALMVLKYGGVL
THAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG
QLTPILVSLVSKDSSMLDGLDNASSEMEAAK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017