Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G15070_circ_g.5 |
ID in PlantcircBase | ath_circ_038363 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 4879594-4882545 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT5G15070 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | AT5G15070_circ_g.2 AT5G15070_circ_g.3 AT5G15070_circ_g.4 AT5G15070_circ_g.6 AT5G15070_circ_g.7 AT5G15070_circ_g.8 AT5G15070_circ_g.9 AT5G15070_circ_g.10 AT5G15070_circ_g.11 AT5G15070_circ_g.12 AT5G15070_circ_g.13 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G15070.4:11 AT5G15070.2:11 AT5G15070.3:11 AT5G15070.5:11 AT5G15070.6:11 AT5G15070.7:11 AT5G15070.1:11 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.115431908 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4879633-4882542(+) |
Potential amino acid sequence |
MAREVCIAFRQAVCGFDLLRSEGSSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLDAKAPHLSS TIPPILPWKINEPVQSNEGLTRQGSGIIGTFGQSEELRCVIAIVRHGDRTPKQKVKLKVTEEKL LNLMLKYNGGKPRAETKLKTAVQLQDLLDATRMLIPRARSGESDSDAEDLEHADKLRQVKAVLE EGGHFSGIYRKVQLKPLKWVNVPKSDGEGEEERPVEALMVLKYGGVLTHAGRKQAEELGRYFRN NMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSML DGLDNASSEMEAAKVRYPVLLTPAEKQMAREVCIAFRQAVCGFDLLRSEGSSYVCDVNGWSFVK NSYKYYDDAACVLRKMFLDAKAPHLSSTIPPILPWKINEPVQSNEGLTRQGSGIIGTFGQSEEL RCVIAIVRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKTAVQLQDLLDATRMLIPR ARSGESDSDAEDLEHADKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVNVPKSDGEGEEERPVEA LMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAA FAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEMEAAKVRYPVLLTPAEKQMAREVCIAFR QAVCGFDLLRSEGSSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLDAKAPHLSSTIPPILPWKI NEPVQSNEGLTRQGSGIIGTFGQSEELRCVIAIVRHGDRTPKQKVKLKVTEEKLLNLMLKYNGG KPRAETKLKTAVQLQDLLDATRMLIPRARSGESDSDAEDLEHADKLRQVKAVLEEGGHFSGIYR KVQLKPLKWVNVPKSDGEGEEERPVEALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGL LRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASSEM EAAKVRYPVLLTPAEKQMAREVCIAFRQAVCGFDLLRSEGSSYVCDVNGWSFVKNSYKYYDDAA CVLRKMFLDAKAPHLSSTIPPILPWKINEPVQSNEGLTRQGSGIIGTFGQSEELRCVIAIVRHG DRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKTAVQLQDLLDATRMLIPRARSGESDSDA EDLEHADKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVNVPKSDGEGEEERPVEALMVLKYGGVL THAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG QLTPILVSLVSKDSSMLDGLDNASSEMEAAK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |