Detail information of BGIOSGA027088_circ_igg.1


General Information
CircRNA Name BGIOSGA027088_circ_igg.1
ID in PlantcircBase osi_circ_017848
Alias Chr08:17946688_17950495(MH63RS2), Chr08:17946688_17950495(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 18034805-18038585  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCTTCATTGGTCTTCCGTACAGATTTGAGTGCATCAAGCTTATAAGCTTTTATGCAATTTAG
GTCCATCTCAGCGGCCAACTTCAAAATATCCATCACctcagtatatttcttagttgatagctca
aatgaaccaacaataccaggtcctccaacttttgggtgctgaaaagattaacaatgacaatgaa
attataga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGTATATTTCTTAGTTGATAGCTCAAATGAACCAACAATACCAGGTCCTCCAACTTTTGGG
TGCTGAAAAGATTAACAATGACAATGAAATTATAGAGCATACAAAAGTAACAAATATAATTGAT
TGTAACTGCAGAGATAGGGCAACTATTTACTATCCTAAGTTAGGAAAAAGAAAGGCATGTTTGT
CACAGAAGTGCATGAGCAAGATTAAATATGTGCAGACTTTAATTTGGTTCAACTTTGTCTAAAG
TGAGATCTATCAGTTTCAAATCAATCCATTAGTCATCATATCTGTAACGAAACTGAACAAAATT
ATAATTTGTAAAACATACAATTTGGCTGGTACATTTCAAGTTCTCCATCTAATAAATTACTAAT
TAAAAATCCTCACCATAGCAATTTAGCAAATTACATCATGGAACTTACCTGTGATCCGAGCGAC
AAAAACTTGTACTTATCCAATGCATATCTGACCAAAGCTTCATTTTCTCCTGGATTTATAGTAC
ACCTACAAAGCAGAAACAACTAGGATAAATGGTATGTAGAATTGTAGATTCCAGATAGAATAAC
TGTGTAAGTTATGTGTTTTTTGGAATGACCACATAAAAAGCTTCCACCAAATACCGATCAATAC
ATATAGATGGGACAAATTTGACTGTTTCACTACCTGAATACCAACAAAATGTGCATGTATGACT
AGAATGTCATGCCCAACATTATTATGTTTTCTTTAGTACTGGTACATCAGCTAGCTAACTGTAC
TGTACACGAAATCTGGATTATGTTATTTATGTACAATCTATAAACAGAGGAAAGGGGAGACCTA
CTATTGGGTTTAGGGAATACAGAAGGTATCTAATTTTAAAGCTATGCTCAGTAAGTAATATCCT
CGACTGATACGTCTATAGCCGTTGAACACTACTCTTCTGGATCCAACACTAAGTTTGTCTAGAG
CTCTGTAGTTTATCGCAATTTCAAGTACAAATAGAATGGATATCTGATTACCACACACATGTGT
GTGTTTAACATCTTTCTTAGTAACATAATTTTTGTTCTCATACACAGTAATAACATAAAATGTT
GAACACTCACGTGGAATAAACAATCACCCCACCAGGGCGAACTAGCTTGACAGCTTGATCAAAC
ATTCTTCTCTGGTACGTCGCATGATTTCTCAGTGATTCCAGCGTTTCCTGCCACATTGAAATGC
ACTAAATATTAGAAGTTGTAGCAACTCATAAAATGATAAATACTTGAGCTTGGTGGAATGCAAA
GATGCAAATCAAACTTCTATAACAATTAGAAGATTATTACAACATGACATATTTGGAAATTCCA
ATAACATGGCAAGGTACAGGCTTACAGAATATGAGATGCCATAGGCTGATAAATTTCAACTTAT
TAATGAATTTCATGTACCTAGCATATCATTACAGTATAAAAATGTTTCCTTAATCAGAATAAGC
ATTCCAAAGATAATTTTAACCAACATATTAAAATATGTAATTTCAACTTTTAAAATAGAGTAAA
TTGCATCAGCGGTACACGAACTTGTTAGGTGGGTGCAATCTAATACATGAACTTGTAAAATGCC
CGTTTTGGTACATGAACTTATCTTGCGTGTGCGAACTAAGGTCAAAAGGACATTACATGACTAA
TTTTGTTGCTTTAGGTGCTGATTAGGATACTATGTAAACATATATATGAGAAGGTTGCTACTTA
GACATGCACCTGTTCAATAAAAAGATATAATGAGATATAGTGATTGTAGAGAAAGATATAAAAT
ACCGGGCAAATGAGCAATGATGCATGGGTTAGAAACATACGAAATTCAAGATAAAGTAGAGAAT
AAATTTATAAATATAGCATGTTTTATGCATACTCACTAGACGTATGCATGCCACATCCTAATTA
ACATCAGCTAGGTAAAATTAACCTTGCTAAACCATTTTGGACCTAGTTCGCACGGATTAGATAA
GTCCGTGTGCCAAAACGTGCATTTTACAAATTCATGTACTAAATTGCACCCACCTAATAAGTTC
GTGTACCACCAATGCAATTTACTCTTTAAAATACCTCAAATACATATAATGCCACACATACCAT
TCTTTTATTATAAAATATGGTAAACTCGAATCTTTGGTTAACATTTTCAATATTGATTACAAAT
TATGAATGAACATAATTGGCCTGGATGTCCAATATTTTAATTTACTAAAAACATCCATTTTTTG
TTAAAAGAATTACACATGATAAAATAACCCATTTCCCAATGTACCATTGTAGGTGTGCGTGCTG
ATGCATAGCTAAGAGTATGGACACTAAACATAAATACCCATTGTCAGTGTTGGTAGGATCACTT
CTGAACTACACTCAATAGTCTAGCTGAAACTGAAACTGAAAATGAGCTGAAAAGCTTACTAACT
CAAGAGGGGTATATGTCCTTTTATAGGACTTTAAGTCGGTGCTACAGTATGCTACAGTAACCGA
CATACTATTCATCTTGCTGTTTACAGCTAAAGTAAAGTCTAAATTTACTACTACTACCAGCTGT
AAGCAGCTGTACATTCTTACTAGCTAAGGAACCTACAGTAGCAAGGATTATGCTAACAGTCAGT
AGAAACAGATCCTGAACATGTAGGTTTACTTGCTAAAGATAGGTTTATCATTTGCATTGCACCT
TTTCTACAAATAAAAGAAAAGTGGTCCTCCATCTTGTTCCCATTGTAAGTCCTTTTACTTGTGC
CCCAGGATTAAGAAAGTAACTGAAAAGATTTTGTTGTCCATCACTTATATTTACGTGGGAAAAA
GATGAGTCAATTAATTTCCGGGAGTAGTACCATTTATTTGCCAAGCCAAAACAAGAAAATGTGA
ACAAGGTCGCATACAAGTTTTAAAATGACCTATATTAGGAAAGAGTTAAGAAGGCTAAACACAA
TCTACATTTAGAATTGGAACGAGTACAGACAAAGTAAAAGGCCAATTCTAAAAGCCATTCTCAA
TTTATGACCAACCGCATCTCTAAATATGGTGAGCCAAACTAGCAATACCCTTACCTCACCAGCA
AAGAGGCGAGGCCTTAAGCCAAGTGCAGAACATGGAGCATCAAGGAGGACACGATCAAAGCTAT
TGGGCAAAAATCCTTTAGAATTTTCAACTCTACCACCTGAGCAGTTATTTCTTCCTGGTCCATT
CCTCATTCGCCTTAAGTTCTTCCTGAGGTCTGCCTTGCTCACATATCTTTTATCATCTGTTTTT
TTGTTATCTAACAAAACAAAATTATCAAATTTCTGAATTCAGCTTAAGAACGACATATACTTAA
GGCACAGGTGCATATATCTATTAGGGAAAATTATGTTCTGAGTGTTTAGTTGGTCTCCGCAAAG
TGCAAAGTAATAAAAAAAGGTTAGATTTAAATAATAAATAATAAAATTAAATATAAGTGATCCC
AGGGTGTGTCATGCGCATTCACCCACCATTATAAAATTAAATAATAAAAAATGAAGAGAAATGG
GTACAAATTTGCATGTCCCTTACCAGTCTGAACAACTGATGTAGTAGAACTGTCTTCACTGGCA
TTAGTAGTCCCAGCATCGACTTTATTAATACAAGGCTCAGAGTCCTCTGCCAGTGTCACAATTG
CATCAGTGCAGCTGCCTGCTTCGCCAATATATTTTGCTTCATTGGTCTTCCGTACAGATTTGAG
TGCATCAAGCTTATAAGCTTTTATGCAATTTAGGTCCATCTCAGCGGCCAACTTCAAAATATCC
ATCAC
Conservation Information
Conserved circRNAs osa_circ_036849 osa_circ_036848
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021