Detail information of BGIOSGA034099_circ_g.1


General Information
CircRNA Name BGIOSGA034099_circ_g.1
ID in PlantcircBase osi_circ_008961
Alias Chr11:12443952_12444094(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 10561243-10561385  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ
Parent gene BGIOSGA034099
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA034099-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATAAAAGCTAAACAATGTTGAGTCAGCTTTGCATCCACACAGAATTCCGCAATGCATCTATC
AGTCGACcttctcagcacccattgtggtgaagctgctgttctttaacccagatagcgcagcccc
tattgaagccatctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCAGCACCCATTGTGGTGAAGCTGCTGTTCTTTAACCCAGATAGCGCAGCCCCTATTGAA
GCCATCTGTTATAAAAGCTAAACAATGTTGAGTCAGCTTTGCATCCACACAGAATTCCGCAATG
CATCTATCAGTCGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021