Detail information of Zm00001d025734_circ_g.2


General Information
CircRNA Name Zm00001d025734_circ_g.2
ID in PlantcircBase zma_circ_010323
Alias zma_circ_0000057, ZmciR432
Organism Zea mays
Position chr10: 127920787-127922862  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d025734
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d025734_T015:5
Zm00001d025734_T017:5
Zm00001d025734_T011:5
Zm00001d025734_T006:5
Zm00001d025734_T008:5
Zm00001d025734_T010:5
Zm00001d025734_T014:4
Zm00001d025734_T012:5
Zm00001d025734_T007:5
Zm00001d025734_T016:5
Zm00001d025734_T013:5
Zm00001d025734_T003:5
Zm00001d025734_T005:5
Zm00001d025734_T009:5
Zm00001d025734_T001:5
Zm00001d025734_T002:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAAACTGAACCACCATACAAAGCTGTTTTAGCGAAAAGGGAGAACTTCAGGGATATAGTGGT
TACTCCTTACATGTTTACAGATCACTTACCATGGAGtagtgaacaattacctgcaactacaaga
gagagagttatttcaacatttccacactatggtcatggtggaattgtagagtctgccagggagc
ttttcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 984
Transcript exons: 127920787-127920899,127921030-127921160,127921860-127921
957,127922085-127922299,127922436-127922862
TAGTGAACAATTACCTGCAACTACAAGAGAGAGAGTTATTTCAACATTTCCACACTATGGTCAT
GGTGGAATTGTAGAGTCTGCCAGGGAGCTTTTCATGCAACTAAATGGAGAAAACACATCTTCTG
GAAGACTTGGGTTCCTTTCCACACTGCTGGGGGAGGGCAGTGAGTGTCATGGATATAAAGTTCG
TCTTGTTGGGCATTCTTTAGGAGGCGCTGTTGCTACAGTCCTAGGAATGATGCTATATGGCAAA
TACCCAAGCGTGCATGTATATGCATATGGACCACTTCCTTGTGTGGACTTTGTAATAGCGGAAG
CATGTTCGCATTTTGTCACAACCATTATTTGCAATGATGAATTTTCCTCTCGCCTTTCAATCAA
TTCGATTCTTAGGCTACGATCTGCTGCAATAAGTGCTCTTTCAGATAACTCTCCAGCTGATACA
GCAATGATACAAAAGCTCGCTCGAAGAATTTTGCATGTGAACAGGTATCATGATAATGGTCCTG
ACGATGGCATAATCCAGGGCTATGCTGATCATACAAGAACAGCAGATACAACAGTACCGAATGA
AAGACAAATTTCTCATCAGATTCCATTATGCAATACTGAACTAGACCTCCACAATACGCAAAAT
GGCTTTTTTAGGTATAATGGGTCCAGTGCATCAATAGATGAGCATCTGAGCTATGAAGGCATAA
GCAGTGGCCATGATATGCAAATAATTCCACTTGATGGGGCTGATTCTGGTTTTGAAGGGCACCA
GACATCTTACAGAGAAATACCAGTGGAGCCTCCTGAGATGTTTCTTGCAGGCTTAATTGTTCAC
ATAGTGCGGCAAAGAAGAAGTCTCTTTCCTCTTTGGAAATGCTGGAGCATCCAGGAAACTGAAC
CACCATACAAAGCTGTTTTAGCGAAAAGGGAGAACTTCAGGGATATAGTGGTTACTCCTTACAT
GTTTACAGATCACTTACCATGGAG

Genomic sequence TAGTGAACAATTACCTGCAACTACAAGAGAGAGAGTTATTTCAACATTTCCACACTATGGTCAT
GGTGGAATTGTAGAGTCTGCCAGGGAGCTTTTCATGCAACTAAATGGAGGTTTGATTTTTTGTT
TCCATACCAACCACTATTGCACATATTAGAAGATTAGGTGCTATACATGAATTACTCTGATTGA
TATATATGTAAAGTGACTAATTCGGTCTCTCTTTCCAAAATGGCAACCCAGAAAACACATCTTC
TGGAAGACTTGGGTTCCTTTCCACACTGCTGGGGGAGGGCAGTGAGTGTCATGGATATAAAGTT
CGTCTTGTTGGGCATTCTTTAGGAGGCGCTGTTGCTACAGTCCTAGGAATGATGGTAAAGATGT
TGAACCTTCTGTTCTATTTTAAAAATGCTCTTTGTTAATTGTTATCCTTATGCAACTTCTACCT
TAGTTTCTAATATGTCTTTTCACCTAAATTTTGGTGTGTTGTTGTAGCATTTGGCCTAATTAGC
TAGGTATGAAGTACATGCATGTGTATGTATGTATCAGGGATACTTCTGAATCTGTAATCGCACA
GATTCCGAAGCAACAAAACTGTGAGATGGACCAATCCATCTATTATATTTATGTCTTTTAGGTG
AAACATCTTTTTTGTTACTTCTCTCAATGACTAGACACAATTCAGTAGCACAAAACTACTATAT
ACTCCCTCTGTCCCAAAATAGTGTTCTTTTTAGGGTGTTAATAGATTCATATAATATTTGATGT
ATGTGTATTATATATGTGTCTAGACTCATTGTTATCCATTTGAATATGGACACAAAAATAAAGA
GCTAGAACAAACAATATATTGGGACAGAGGGAGTATGTTATATTCCTATGAGCTTGAGATGCAA
ATTGCTACTGTTTCAGCTCACATGGTCATTTAGCATATTTTCAAAATTCAAACTAACTAGACCA
ACCTAGGAGGTTTATTATGTTTTCTATCAATGTATATTTTTCTGTTCGTTCGTACTTTACCTTT
CCTTTTTCCCTATGATTGCTGATTAGTTTTTAACTTTGCTGTTGACCAGCTATATGGCAAATAC
CCAAGCGTGCATGTATATGCATATGGACCACTTCCTTGTGTGGACTTTGTAATAGCGGAAGCAT
GTTCGCATTTTGTCACAACGTACGAATAAACTGAGATCTTCCTGTGGCTACTATTTTCAATGGA
ACTTCAGTTTTGGTGTGCTGTTCTCTTATAAGGTTCATTAACTTCTGACTACCGAGGTGACTTT
TGCTCTGTTTCCTTGCAGCATTATTTGCAATGATGAATTTTCCTCTCGCCTTTCAATCAATTCG
ATTCTTAGGCTACGATCTGCTGCAATAAGTGCTCTTTCAGATAACTCTCCAGCTGATACAGCAA
TGATACAAAAGCTCGCTCGAAGAATTTTGCATGTGAACAGGTATCATGATAATGGTCCTGACGA
TGGCATAATCCAGGGCTATGCTGATCATACAAGAACAGCAGGTAGGCATAATTTTTTTGTGGTA
GTTTCTTTTACCTTCTGTTTGTGCAGTCTTAAATATGAATGGAGTCTTGTTTTGCAAACTTCAT
TCATCTTTTCTGTAATCATCTAATGTGTTACCTTTTTCTCCTGTAACAGATACAACAGTACCGA
ATGAAAGACAAATTTCTCATCAGATTCCATTATGCAATACTGAACTAGACCTCCACAATACGCA
AAATGGCTTTTTTAGGTATAATGGGTCCAGTGCATCAATAGATGAGCATCTGAGCTATGAAGGC
ATAAGCAGTGGCCATGATATGCAAATAATTCCACTTGATGGGGCTGATTCTGGTTTTGAAGGGC
ACCAGACATCTTACAGAGAAATACCAGTGGAGCCTCCTGAGATGTTTCTTGCAGGCTTAATTGT
TCACATAGTGCGGCAAAGAAGAAGTCTCTTTCCTCTTTGGAAATGCTGGAGCATCCAGGAAACT
GAACCACCATACAAAGCTGTTTTAGCGAAAAGGGAGAACTTCAGGGATATAGTGGTTACTCCTT
ACATGTTTACAGATCACTTACCATGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.159933046
Functional Information
Coding potential Y
Potential coding position 127920885-127922859(+)
Potential amino acid sequence MQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGMMLYGKYPSVHVYAYGP
LPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDNSPADTAMIQKLARRIL
HVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDLHNTQNGFFRYNGSSAS
IDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLAGLIVHIVRQRRSLFPL
WKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATTRERVISTFPHYGHGGI
VESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGMMLYGKYPS
VHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDNSPADTAMI
QKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDLHNTQNGFF
RYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLAGLIVHIVR
QRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATTRERVISTF
PHYGHGGIVESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGM
MLYGKYPSVHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDN
SPADTAMIQKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDL
HNTQNGFFRYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLA
GLIVHIVRQRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATT
RERVISTFPHYGHGGIVESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGG
AVATVLGMMLYGKYPSVHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSA
AISALSDNSPADTAMIQKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIP
LCNTELDLHNTQNGFFRYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPV
EPPEMFLAGLIVHIVRQRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPW(
+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019