Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d025734_circ_g.2 |
| ID in PlantcircBase | zma_circ_010323 |
| Alias | zma_circ_0000057, ZmciR432 |
| Organism | Zea mays |
| Position | chr10: 127920787-127922862 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ, CIRI2 |
| Parent gene | Zm00001d025734 |
| Parent gene annotation |
protein_coding |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d025734_T015:5 Zm00001d025734_T017:5 Zm00001d025734_T011:5 Zm00001d025734_T006:5 Zm00001d025734_T008:5 Zm00001d025734_T010:5 Zm00001d025734_T014:4 Zm00001d025734_T012:5 Zm00001d025734_T007:5 Zm00001d025734_T016:5 Zm00001d025734_T013:5 Zm00001d025734_T003:5 Zm00001d025734_T005:5 Zm00001d025734_T009:5 Zm00001d025734_T001:5 Zm00001d025734_T002:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.159933046 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
127920885-127922859(+) |
| Potential amino acid sequence |
MQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGMMLYGKYPSVHVYAYGP LPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDNSPADTAMIQKLARRIL HVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDLHNTQNGFFRYNGSSAS IDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLAGLIVHIVRQRRSLFPL WKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATTRERVISTFPHYGHGGI VESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGMMLYGKYPS VHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDNSPADTAMI QKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDLHNTQNGFF RYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLAGLIVHIVR QRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATTRERVISTF PHYGHGGIVESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGM MLYGKYPSVHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDN SPADTAMIQKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDL HNTQNGFFRYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLA GLIVHIVRQRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATT RERVISTFPHYGHGGIVESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGG AVATVLGMMLYGKYPSVHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSA AISALSDNSPADTAMIQKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIP LCNTELDLHNTQNGFFRYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPV EPPEMFLAGLIVHIVRQRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPW( +) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Ma et al., 2021b;Zhang et al., 2019 |