Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025734_circ_g.2 |
ID in PlantcircBase | zma_circ_010323 |
Alias | zma_circ_0000057, ZmciR432 |
Organism | Zea mays |
Position | chr10: 127920787-127922862 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d025734 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d025734_T015:5 Zm00001d025734_T017:5 Zm00001d025734_T011:5 Zm00001d025734_T006:5 Zm00001d025734_T008:5 Zm00001d025734_T010:5 Zm00001d025734_T014:4 Zm00001d025734_T012:5 Zm00001d025734_T007:5 Zm00001d025734_T016:5 Zm00001d025734_T013:5 Zm00001d025734_T003:5 Zm00001d025734_T005:5 Zm00001d025734_T009:5 Zm00001d025734_T001:5 Zm00001d025734_T002:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.159933046 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
127920885-127922859(+) |
Potential amino acid sequence |
MQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGMMLYGKYPSVHVYAYGP LPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDNSPADTAMIQKLARRIL HVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDLHNTQNGFFRYNGSSAS IDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLAGLIVHIVRQRRSLFPL WKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATTRERVISTFPHYGHGGI VESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGMMLYGKYPS VHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDNSPADTAMI QKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDLHNTQNGFF RYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLAGLIVHIVR QRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATTRERVISTF PHYGHGGIVESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGM MLYGKYPSVHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDN SPADTAMIQKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDL HNTQNGFFRYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLA GLIVHIVRQRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWSSEQLPATT RERVISTFPHYGHGGIVESARELFMQLNGENTSSGRLGFLSTLLGEGSECHGYKVRLVGHSLGG AVATVLGMMLYGKYPSVHVYAYGPLPCVDFVIAEACSHFVTTIICNDEFSSRLSINSILRLRSA AISALSDNSPADTAMIQKLARRILHVNRYHDNGPDDGIIQGYADHTRTADTTVPNERQISHQIP LCNTELDLHNTQNGFFRYNGSSASIDEHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPV EPPEMFLAGLIVHIVRQRRSLFPLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPW( +) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |