Plant Circular RNA Database

Detail information of Os02g0778200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0778200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016759
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 32934437-32937556  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0778200						
					
						Parent gene annotation
						
							Isoleucyl-tRNA synthetase domain containing protein. (Os02t07782
00-01);Similar to predicted protein. (Os02t0778200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0778200_circ_g.2 Os02g0778200_circ_g.3 Os02g0778200_circ_g.4 Os02g0778200_circ_g.5 Os02g0778200_circ_g.6 Os02g0778200_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0778200-01:7

General Information
CircRNA Name	Os02g0778200_circ_g.1
ID in PlantcircBase	osa_circ_016759
Alias	NA
Organism	Oryza sativa
Position	chr2: 32934437-32937556 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0778200
Parent gene annotation	Isoleucyl-tRNA synthetase domain containing protein. (Os02t07782 00-01);Similar to predicted protein. (Os02t0778200-02)
Parent gene strand	+
Alternative splicing	Os02g0778200_circ_g.2 Os02g0778200_circ_g.3 Os02g0778200_circ_g.4 Os02g0778200_circ_g.5 Os02g0778200_circ_g.6 Os02g0778200_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0778200-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTTCGGCCAAATGGTTATGAAAGGATATATCTACCGCGGGCGAAAACCTGTTCATTGGAGTCCG
TCATCACGTACAGCTTTAGCAGAAGCTGAGTTGGAGgtcttctcgacgcagagatgccgcttcc
cgctgcggaggctggcgccgccgatttcgcggcggccgttcggcacggagtcgacgagtgagct
gttcgccg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTCTTCTCGACGCAGAGATGCCGCTTCCCGCTGCGGAGGCTGGCGCCGCCGATTTCGCGGCGGC
CGTTCGGCACGGAGTCGACGAGTGAGCTGTTCGCCGCGTCGACCTCGAAGCGGCGCTCCCGGGG
GCCCGTCATGGCGGCGAAGAAGGCCGCCGAGGGTGAGTCGACTTGATCCCATTGCTGTACTGTT
CTTATTTTTGGTTCAGGTTGAGGGTTTGGTGAGGGTTTTAGTAGGGGGATTGGTGTCTATATGT
TGGTATTTCAGTGATGTGAGTTTTGGCTGTGGAGTAGGTGCATTAGGCGTCCGATTTTTCTTGG
GATTACTCTGTGTCTGTGGTCAATGTATATCGTACTTGCTCTGTGGATTGTGGGGATGCCAGCC
ATTTTTGTCTGGTGAGGCGTTGGAGGTTGAAGCTGGTCTATGGCCTGGAGATTTTCGTTCTTGC
TGTTCACGTTTTGATGGGATTGATCACAGGGTGAGGCACATGATTACAGATATTGAACTCGTGT
GACGTACAGCTTAAACTGGTTGGTTAATTTAGGTTCAAATATGTGATTGTAGTTTCCACTTCTG
CAATTGCTATAATTATTTTCAGCTTAAGCACGTAGGGCTTATTAAACTCATTACCAAACTTGTT
TTACTGCAGTTTTCTGTTACATTTGTACTTTTATGATTGATGTGTGTTACTTAGGCTCAATCTG
CTTGGTTTAGCCTTAAGTATGCTATGACCTGGGATTTTTGTAATTGGTGTACTTTTCAGATTTA
AGAATGTACACACCTATTGGACTTCTCAGTTCGCACCAAAATGCACTTATTAGGTCTCAAGCAC
CATGGTTGGAAGATTATTATTGTTTTGCGTATCAGATTAAGCTTAATTCTCATTTTCTCCATTT
GGAGTAGCATCAACTAGTGCTCGAAAGTCGAAACTTGATGCTTATGCTTGTTAGGATGAAAGCT
GTTTAAGCTTAAATGTGTTTTGTATACCCAGAATTCGGTAATCAGATTGATTTTTGAAAATAAC
TTTGTTATCTGGTGTTAGTTGAAACTTTGTTATTTCAGTACATTCCATTGAGATTCAAATGCAG
TGAGACCCTCTGCTTACTTAGTAGGTGTCAATACTGAAGCTTTTACTGGCAAAAGTTATGGTGT
ATTTTGTAATGAAAATCTCGTAGAGACATGTAATTAATTTTATCTGGCTGTTTTATAATGAATA
GTAGTTGGTAGTTTGACAGGTTGAGTCCCAGTTTCAATTTAGTACTGCTTGCAGAGTTAAATTC
ATTAAGATATAATTATATATTTAGCTTCTTGATTCTGGCTAGGTGCTAAACAAGAAGAGGGGAA
ATACAAACACACGGTGGATCTACCAAAGACAACTTTTGGCTTGAGAGCTAATTCTGTTGTGCGG
GAGCCGGAGCTCCAGAAGTTGTGGGAGGAGAACCAGGTGCTCAAGAGGGTATCAGAAAGGAACA
CTGGGGTGAGTATTTCTTCGAGTAAAGCTAAAAGTAAAATTAAAATTTACCTGACTTTGTTGGT
TTTCTTGACTGTTGGATTAGGCTACATTTGTTCTCCATGATGGTCCTCCTTATGCTAATGGTGA
TCTTCATATGGGCCATGCACTGAATAAAATCCTCAAAGATATTATAAACCGTTACAAGGTATCG
TTTACTCTTCAATCTAATCTGAGTATTTTTCTTTAAAAACCATTGATGTATTTTTCAGGGCAAT
TACTGATGCAGTCATAGTATGTTGTCTTATTCAGTTCAATCCATAGGATATTCTCTGTTCTGAG
ATCAATGTTACTGTACGGATGATTGGTGCATAGATTTTATTGTCTTTTCCAATGCAGTGCAATT
TCTGTCATTTCTTTATCTTAACATGTAGAGCTCTTTAGTGTAGTTGATTGTGTACGAGATTTGG
ATGATTAATGAACTTTTTGCTAATTCTAGTAGTTTTTTCCTGATAACTCTCTTCGCTGAAATGT
CTTTAACTTTTTTTGGCTGGATGACTATGCTTTTTATGTTGGTCCAAACCAAAATTGGGAACAT
AAATCAACTGACACCAAAATTTGCTTTTCTTCTGTGTGCAGCTGCTTCAGAATCACAAAGTTTC
TTTTATTCCTGGATGGGATTGCCATGGCCTTCCAATCGAATTAAAAGGCAAGTTCATCTTTATA
TCCAATGGAAACACCCTATGTTTACAAGAAGTTAGGTAGGGGTTGGTTTTAACACAATGCTTGC
ATGTGTTAGACCAGCCAAGTAATTATTGAATATCCTTCCAAATGTAACCATTGACTATTTGCTG
CAGTTCTAAAGTCACTGGACAAGGAAACATTGAATGCTCTGACACCTATAAAATTAAGGCAGAA
GGCTGCAAAATTTGCTAAAGCGACGGTTACTACACAAATGAATTCTTTCAAGGTAACCATTTCT
TTATTTTAAAGTACTTTAGTGGTGACATGATCTAATAGCAAGTTGCCCTTATCTATGTTTTGTG
GTATTTCCTGGTATGATTGCTGACTTGCAGTCATCTAATATCTGGAATTCTGTCTCATGTTAGC
CTTTAGTTTCATATTTCTATAATTGTATTAACCAATGACATTGTGCCTGCAGCGGTTTGGTGTA
TGGGCAGATTGGGACAACCCTTATCTAACTCTGTCACCAGAGTATGAAGCTGCTCAGGTCTGAT
CCTATTGTTTATAGTAATTTTGCCATTGCATCAAAACTTATTTATCCATTTCACATGAATGAAA
GCTTGGAGGTTTGGAATTACCTTAGTTAGATCATTGATATCATCTTGGTCACATTATAGCTGCT
AGCTCTAATAAAAAAAATAGAGCTGTTTACTTTCAGTTCCTTTTAGTCCATTTACCATCGTTGA
TATAAAATATATAACGTGTATGCAAATTTTATGCTGCGAGAATAAATACTGATGTTTTCTTTTT
CATCCTTATCATATGTTTTTAATCAAGGCTAACCGTAACAACTCTTGTTCTCCATTTTGATATG
CCAGCTAGAAGTTTTCGGCCAAATGGTTATGAAAGGATATATCTACCGCGGGCGAAAACCTGTT
CATTGGAGTCCGTCATCACGTACAGCTTTAGCAGAAGCTGAGTTGGAG
						
					

			
		

Sequences
Splice junction sequence	TTTCGGCCAAATGGTTATGAAAGGATATATCTACCGCGGGCGAAAACCTGTTCATTGGAGTCCG TCATCACGTACAGCTTTAGCAGAAGCTGAGTTGGAGgtcttctcgacgcagagatgccgcttcc cgctgcggaggctggcgccgccgatttcgcggcggccgttcggcacggagtcgacgagtgagct gttcgccg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTCTTCTCGACGCAGAGATGCCGCTTCCCGCTGCGGAGGCTGGCGCCGCCGATTTCGCGGCGGC CGTTCGGCACGGAGTCGACGAGTGAGCTGTTCGCCGCGTCGACCTCGAAGCGGCGCTCCCGGGG GCCCGTCATGGCGGCGAAGAAGGCCGCCGAGGGTGAGTCGACTTGATCCCATTGCTGTACTGTT CTTATTTTTGGTTCAGGTTGAGGGTTTGGTGAGGGTTTTAGTAGGGGGATTGGTGTCTATATGT TGGTATTTCAGTGATGTGAGTTTTGGCTGTGGAGTAGGTGCATTAGGCGTCCGATTTTTCTTGG GATTACTCTGTGTCTGTGGTCAATGTATATCGTACTTGCTCTGTGGATTGTGGGGATGCCAGCC ATTTTTGTCTGGTGAGGCGTTGGAGGTTGAAGCTGGTCTATGGCCTGGAGATTTTCGTTCTTGC TGTTCACGTTTTGATGGGATTGATCACAGGGTGAGGCACATGATTACAGATATTGAACTCGTGT GACGTACAGCTTAAACTGGTTGGTTAATTTAGGTTCAAATATGTGATTGTAGTTTCCACTTCTG CAATTGCTATAATTATTTTCAGCTTAAGCACGTAGGGCTTATTAAACTCATTACCAAACTTGTT TTACTGCAGTTTTCTGTTACATTTGTACTTTTATGATTGATGTGTGTTACTTAGGCTCAATCTG CTTGGTTTAGCCTTAAGTATGCTATGACCTGGGATTTTTGTAATTGGTGTACTTTTCAGATTTA AGAATGTACACACCTATTGGACTTCTCAGTTCGCACCAAAATGCACTTATTAGGTCTCAAGCAC CATGGTTGGAAGATTATTATTGTTTTGCGTATCAGATTAAGCTTAATTCTCATTTTCTCCATTT GGAGTAGCATCAACTAGTGCTCGAAAGTCGAAACTTGATGCTTATGCTTGTTAGGATGAAAGCT GTTTAAGCTTAAATGTGTTTTGTATACCCAGAATTCGGTAATCAGATTGATTTTTGAAAATAAC TTTGTTATCTGGTGTTAGTTGAAACTTTGTTATTTCAGTACATTCCATTGAGATTCAAATGCAG TGAGACCCTCTGCTTACTTAGTAGGTGTCAATACTGAAGCTTTTACTGGCAAAAGTTATGGTGT ATTTTGTAATGAAAATCTCGTAGAGACATGTAATTAATTTTATCTGGCTGTTTTATAATGAATA GTAGTTGGTAGTTTGACAGGTTGAGTCCCAGTTTCAATTTAGTACTGCTTGCAGAGTTAAATTC ATTAAGATATAATTATATATTTAGCTTCTTGATTCTGGCTAGGTGCTAAACAAGAAGAGGGGAA ATACAAACACACGGTGGATCTACCAAAGACAACTTTTGGCTTGAGAGCTAATTCTGTTGTGCGG GAGCCGGAGCTCCAGAAGTTGTGGGAGGAGAACCAGGTGCTCAAGAGGGTATCAGAAAGGAACA CTGGGGTGAGTATTTCTTCGAGTAAAGCTAAAAGTAAAATTAAAATTTACCTGACTTTGTTGGT TTTCTTGACTGTTGGATTAGGCTACATTTGTTCTCCATGATGGTCCTCCTTATGCTAATGGTGA TCTTCATATGGGCCATGCACTGAATAAAATCCTCAAAGATATTATAAACCGTTACAAGGTATCG TTTACTCTTCAATCTAATCTGAGTATTTTTCTTTAAAAACCATTGATGTATTTTTCAGGGCAAT TACTGATGCAGTCATAGTATGTTGTCTTATTCAGTTCAATCCATAGGATATTCTCTGTTCTGAG ATCAATGTTACTGTACGGATGATTGGTGCATAGATTTTATTGTCTTTTCCAATGCAGTGCAATT TCTGTCATTTCTTTATCTTAACATGTAGAGCTCTTTAGTGTAGTTGATTGTGTACGAGATTTGG ATGATTAATGAACTTTTTGCTAATTCTAGTAGTTTTTTCCTGATAACTCTCTTCGCTGAAATGT CTTTAACTTTTTTTGGCTGGATGACTATGCTTTTTATGTTGGTCCAAACCAAAATTGGGAACAT AAATCAACTGACACCAAAATTTGCTTTTCTTCTGTGTGCAGCTGCTTCAGAATCACAAAGTTTC TTTTATTCCTGGATGGGATTGCCATGGCCTTCCAATCGAATTAAAAGGCAAGTTCATCTTTATA TCCAATGGAAACACCCTATGTTTACAAGAAGTTAGGTAGGGGTTGGTTTTAACACAATGCTTGC ATGTGTTAGACCAGCCAAGTAATTATTGAATATCCTTCCAAATGTAACCATTGACTATTTGCTG CAGTTCTAAAGTCACTGGACAAGGAAACATTGAATGCTCTGACACCTATAAAATTAAGGCAGAA GGCTGCAAAATTTGCTAAAGCGACGGTTACTACACAAATGAATTCTTTCAAGGTAACCATTTCT TTATTTTAAAGTACTTTAGTGGTGACATGATCTAATAGCAAGTTGCCCTTATCTATGTTTTGTG GTATTTCCTGGTATGATTGCTGACTTGCAGTCATCTAATATCTGGAATTCTGTCTCATGTTAGC CTTTAGTTTCATATTTCTATAATTGTATTAACCAATGACATTGTGCCTGCAGCGGTTTGGTGTA TGGGCAGATTGGGACAACCCTTATCTAACTCTGTCACCAGAGTATGAAGCTGCTCAGGTCTGAT CCTATTGTTTATAGTAATTTTGCCATTGCATCAAAACTTATTTATCCATTTCACATGAATGAAA GCTTGGAGGTTTGGAATTACCTTAGTTAGATCATTGATATCATCTTGGTCACATTATAGCTGCT AGCTCTAATAAAAAAAATAGAGCTGTTTACTTTCAGTTCCTTTTAGTCCATTTACCATCGTTGA TATAAAATATATAACGTGTATGCAAATTTTATGCTGCGAGAATAAATACTGATGTTTTCTTTTT CATCCTTATCATATGTTTTTAATCAAGGCTAACCGTAACAACTCTTGTTCTCCATTTTGATATG CCAGCTAGAAGTTTTCGGCCAAATGGTTATGAAAGGATATATCTACCGCGGGCGAAAACCTGTT CATTGGAGTCCGTCATCACGTACAGCTTTAGCAGAAGCTGAGTTGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.232864052

Conservation Information
Conserved circRNAs	NA
PMCS	0.232864052

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							32934573-32937553(+)
32934575-32937510(-)
						
						Potential amino acid sequence
						
							MAAKKAAEGAKQEEGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVSERNTGATFV
LHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFIPGWDCHGLPIELKVLKSLDKETLN
ALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWADWDNPYLTLSPEYEAAQLEVFGQMVMKGYIY
RGRKPVHWSPSSRTALAEAELEVFSTQRCRFPLRRLAPPISRRPFGTESTSELFAASTSKRRSR
GPVMAAKKAAEGAKQEEGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVSERNTGA
TFVLHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFIPGWDCHGLPIELKVLKSLDKE
TLNALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWADWDNPYLTLSPEYEAAQLEVFGQMVMKG
YIYRGRKPVHWSPSSRTALAEAELEVFSTQRCRFPLRRLAPPISRRPFGTESTSELFAASTSKR
RSRGPVMAAKKAAEGAKQEEGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVSERN
TGATFVLHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFIPGWDCHGLPIELKVLKSL
DKETLNALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWADWDNPYLTLSPEYEAAQLEVFGQMV
MKGYIYRGRKPVHWSPSSRTALAEAELEVFSTQRCRFPLRRLAPPISRRPFGTESTSELFAAST
SKRRSRGPVMAAKKAAEGAKQEEGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVS
ERNTGATFVLHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFIPGWDCHGLPIELKVL
KSLDKETLNALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWADWDNPYLTLSPEYEAAQLEVFG
QMVMKGYIYRGRKPVHWSPSSRTALAEAELE(+)
MTGPRERRFEVDAANSSLVDSVPNGRREIGGASLRSGKRHLCVEKTSNSASAKAVRDDGLQ*(-
)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	32934573-32937553(+) 32934575-32937510(-)
Potential amino acid sequence	MAAKKAAEGAKQEEGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVSERNTGATFV LHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFIPGWDCHGLPIELKVLKSLDKETLN ALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWADWDNPYLTLSPEYEAAQLEVFGQMVMKGYIY RGRKPVHWSPSSRTALAEAELEVFSTQRCRFPLRRLAPPISRRPFGTESTSELFAASTSKRRSR GPVMAAKKAAEGAKQEEGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVSERNTGA TFVLHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFIPGWDCHGLPIELKVLKSLDKE TLNALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWADWDNPYLTLSPEYEAAQLEVFGQMVMKG YIYRGRKPVHWSPSSRTALAEAELEVFSTQRCRFPLRRLAPPISRRPFGTESTSELFAASTSKR RSRGPVMAAKKAAEGAKQEEGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVSERN TGATFVLHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFIPGWDCHGLPIELKVLKSL DKETLNALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWADWDNPYLTLSPEYEAAQLEVFGQMV MKGYIYRGRKPVHWSPSSRTALAEAELEVFSTQRCRFPLRRLAPPISRRPFGTESTSELFAAST SKRRSRGPVMAAKKAAEGAKQEEGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVS ERNTGATFVLHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFIPGWDCHGLPIELKVL KSLDKETLNALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWADWDNPYLTLSPEYEAAQLEVFG QMVMKGYIYRGRKPVHWSPSSRTALAEAELE(+) MTGPRERRFEVDAANSSLVDSVPNGRREIGGASLRSGKRHLCVEKTSNSASAKAVRDDGLQ*(- )
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0778200_circ_g.1

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