Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G03070_circ_g.2 |
ID in PlantcircBase | ath_circ_000379 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 730140-730415 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G03070 |
Parent gene annotation |
Protein LIFEGUARD 4 |
Parent gene strand | + |
Alternative splicing | AT1G03070_circ_g.1 AT1G03070_circ_g.3 AT1G03070_circ_g.4 |
Support reads | 3/3 |
Tissues | inflorescences/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G03070.2:1 AT1G03070.3:1 AT1G03070.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.121074366 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
730148-730412(+) |
Potential amino acid sequence |
MYKWNLPYRKDDVETGREGGERSLYPTMLESPELRWGFIRKVYSIIAFQLLATIAVASTVVFVR PIAVFFATTSAGLALWIVLIITPLIVFRMYKWNLPYRKDDVETGREGGERSLYPTMLESPELRW GFIRKVYSIIAFQLLATIAVASTVVFVRPIAVFFATTSAGLALWIVLIITPLIVFRMYKWNLPY RKDDVETGREGGERSLYPTMLESPELRWGFIRKVYSIIAFQLLATIAVASTVVFVRPIAVFFAT TSAGLALWIVLIITPLIVFRMYKWNLPYRKDDVETGREGGERSLYPTMLESPELRWGFIRKVYS IIAFQLLATIAVASTVVFVRPIAVFFATTSAGLALWIVLIITPLI(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Pan et al., 2017 |