Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G22750_circ_g.2 |
ID in PlantcircBase | ath_circ_003937 |
Alias | Ath_circ_FC0482 |
Organism | Arabidpsis thaliana |
Position | chr1: 8051830-8052480 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G22750 |
Parent gene annotation |
AT1G22750 protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 3 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G22750.4:4 AT1G22750.2:4 AT1G22750.3:4 AT1G22750.1:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.180765926 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
8051906-8052477(+) |
Potential amino acid sequence |
MLGALVYTCFTYGSPFHMELLYPWMVVLLVNFYIDVAVLSVWVVYKESSLIIGILWVALLIGLG SVGTSAVIVVQLFRLSPLDPLYLVLVNNSNRDGVGLRDKNSLVVTARFVFGALGCVMLGALVYT CFTYGSPFHMELLYPWMVVLLVNFYIDVAVLSVWVVYKESSLIIGILWVALLIGLGSVGTSAVI VVQLFRLSPLDPLYLVLVNNSNRDGVGLRDKNSLVVTARFVFGALGCVMLGALVYTCFTYGSPF HMELLYPWMVVLLVNFYIDVAVLSVWVVYKESSLIIGILWVALLIGLGSVGTSAVIVVQLFRLS PLDPLYLVLVNNSNRDGVGLRDKNSLVVTARFVFGALGCVMLGALVYTCFTYGSPFHMELLYPW MVVLLVNFYIDVAVLSVWVVYKESSLIIGILWVALLIGLGSVGTSAVIVVQLFRLSPLDPLYLV LVNNSN(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017;Chen et al., 2017a |