Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d023587_circ_g.2 |
ID in PlantcircBase | zma_circ_010163 |
Alias | zma_circ_0000034 |
Organism | Zea mays |
Position | chr10: 10858805-10862060 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d023587 |
Parent gene annotation |
DNA-directed RNA polymerases II IV and V subunit 10 |
Parent gene strand | + |
Alternative splicing | Zm00001d023587_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d023587_T001:3 Zm00001d023587_T003:3 Zm00001d023587_T004:1 Zm00001d023587_T005:3 Zm00001d023587_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.960689944 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
10862026-10858831(+) 10859648-10858827(+) 10858844-10859586(-) |
Potential amino acid sequence |
MLTSLRSCSTTTHWRRPRQVK*(+) MYSCTHTHKNGARSPQLGDRAGGGFVRPPAGQPSKLDERLHLPLRYSSNDTAAAAAKMIIPVRC FTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS *(+) MLAHLTCLGLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFRVVGLEEVEVEVPLVPNH LAAGEAAHRYDHLRRRRRRVVGGVPQGEMEPLVQLRGLTGRRPNESAACSIPQLRGSRAIFVCV CTTVHRSVVLFDSLFFDHSFVPPCK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |