Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G07110_circ_g.19 |
ID in PlantcircBase | ath_circ_001113 |
Alias | At_ciR3879 |
Organism | Arabidpsis thaliana |
Position | chr1: 2181529-2182136 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G07110 |
Parent gene annotation |
FKFBP |
Parent gene strand | - |
Alternative splicing | AT1G07110_circ_g.1 AT1G07110_circ_g.2 AT1G07110_circ_g.3 AT1G07110_circ_g.4 AT1G07110_circ_g.5 AT1G07110_circ_g.6 AT1G07110_circ_g.7 AT1G07110_circ_g.8 AT1G07110_circ_g.9 AT1G07110_circ_g.10 AT1G07110_circ_g.11 AT1G07110_circ_g.12 AT1G07110_circ_g.13 AT1G07110_circ_g.14 AT1G07110_circ_g.15 AT1G07110_circ_g.16 AT1G07110_circ_g.17 AT1G07110_circ_g.18 AT1G07110_circ_g.20 AT1G07110_circ_g.21 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G07110.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.180764885 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2181906-2181531(-) |
Potential amino acid sequence |
MSADFFRADNPEGVEARTEVAALAMEDMIAWMQEGGQVGLPARGKTFTAAKLTRYLRWLGHDTK HFNVGKYRRLKHGVNMSADFFRADNPEGVEARTEVAALAMEDMIAWMQEGGQVGLPARGKTFTA AKLTRYLRWLGHDTKHFNVGKYRRLKHGVNMSADFFRADNPEGVEARTEVAALAMEDMIAWMQE GGQVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNMSADFFRADNPEGVEARTE VAALAMEDMIAWMQEGGQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |