Detail information of AT2G06850_circ_g.1


General Information
CircRNA Name AT2G06850_circ_g.1
ID in PlantcircBase ath_circ_012982
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2763819-2764258  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method circRNA_finder
Parent gene AT2G06850
Parent gene annotation Xyloglucan endotransglucosylase/hydrolase protein 4
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root, whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G06850.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAAATCAATTTATTTAGGATTTGTTTTGTAAAAATGTATAAAACACCTTACTTTTATCTTTCA
TTAGGCCCCAAGATCTTAGGTACACTCACTCACTAAaattactattaccaaatctctgcctaat
gatcacaatgcaagttttgatattcccattttttatttggtatataggctaaagcttaattttt
aaaggtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTACTATTACCAAATCTCTGCCTAATGATCACAATGCAAGTTTTGATATTCCCATTTTTTAT
TTGGTATATAGGCTAAAGCTTAATTTTTAAAGGTTAAATTTTCTTGAGTTTAAAACTACATTTC
ATTTACAGATTAAGTAATTAGCATTAATCATCTCTATTATTTTACAACTCAATATATTTAAATT
TTATTTAGGCTTTGTTTTGTAAAAATATATTTAGATTTAACATGGTCCTACTAGTGATAATTAT
TTTTAAGGGCTAAATTTTCTTGAGTTTAAAACTACATTTCATTTCACAGATTAAGTAAATAGCA
TTAGTCATATCTATTATTTTACAAATCAATTTATTTAGGATTTGTTTTGTAAAAATGTATAAAA
CACCTTACTTTTATCTTTCATTAGGCCCCAAGATCTTAGGTACACTCACTCACTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.136414262
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017