Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G15280_circ_g.3 |
ID in PlantcircBase | ath_circ_002672 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5253546-5254836 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G15280 |
Parent gene annotation |
CASC3/Barentsz eIF4AIII binding protein |
Parent gene strand | + |
Alternative splicing | AT1G15280_circ_g.1 AT1G15280_circ_g.2 AT1G15280_circ_g.4 AT1G15280_circ_g.5 |
Support reads | 3 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G15280.1:3 AT1G15280.2:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.14753352 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Pan et al., 2017 |