Detail information of Zm00001d021588_circ_g.1


General Information
CircRNA Name Zm00001d021588_circ_g.1
ID in PlantcircBase zma_circ_009423
Alias zma_circ_0002607
Organism Zea mays
Position chr7: 157320181-157325016  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d021588
Parent gene annotation Mitotic checkpoint serine/threonine-protein kinase BUB1
Parent gene strand +
Alternative splicing Zm00001d021588_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Zm00001d021588_T001:2
Zm00001d021588_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGTATGACACGACAGCCTTAGACAGGCTCAAGCATTACTTGACTGAATGCATTGCAAAATAT
GGGGATGACTACCAATACTCCACTGATCCACGGTTGcgcactccggccgcggcgcagggggccg
cctgtagcccgctcccgaagtcgcctaggttttcgtgggaggtggcctcgccgccctcggaccc
catcctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCACTCCGGCCGCGGCGCAGGGGGCCGCCTGTAGCCCGCTCCCGAAGTCGCCTAGGTTTTCGT
GGGAGGTGGCCTCGCCGCCCTCGGACCCCATCCTCCCGTACCTCAGGTAATCTCGAATCTACCT
CGAGATATGCCTCTGTTACTTGGATTCATTTAGCGTGTGCGAATCCGTGTGGGAGCTCGCTTAG
TGCACGGGTGCGGTGCGTCCGTGCGTGTGCTTGTGCGTGTCTGAAGGTTCCGCCGTTTGATTGA
ATGTAAAGCATGTGCAATTTGGACGTTTAGTTTAGCTTGCGCGGCTCTACCTCCGCGATTCAGG
GTCTGGTTACTCATGCCTACCAGTACCCCTGTGGGATTGAACTGGGATGCACTAGTATATGTTG
ATTTCTTATTCAAATTCTTGCGAGGCTGCCATGTGTGAGACCTTGATTTCGGTCTTAATTAGGC
TGCTTATAGGTCTGATTTTCCTCTTCTAAAAATCCATGTACATAATGGAATGAGCTTAGACATG
TGTTTGGGTCAAGGATAACCAAACCGTTTTTGGAGAAAACTGCTACCCACGGGTAATGGGTAAA
CCGGTGAAAACCGACAAAATCAACCGGTTTGCCCATGTCAAATTTGAACAAATTCAAAATGGTT
TTACGGCGAAAAACCGGCGGTAAACCACCCAATGCCGCTGGTAAACCACCCATATGAATCATTT
TTTTGTTTTCAGGGAAAAATGGAAAATTTTGGCAGAGTTCATTTGTAATTTGCTCAATTCACGT
TGCATAGTAAATACTAACTGACTCACACAACATATGTTCACCAAAATGATATTCAACATACATA
TGCAACCACAAACTTCAATTCTCATGCAACAAACAACCATCGGATGGCACAATACTCAAATACA
ATTATACAAGTTCTTTTAGAGTTCTCCCACGAGGCCACGATACATATGTCTACTTGTTTCACAA
TACTCTTTATTCAGCTCGAGTCATAGTATTCAGGCATGTTGGAAGGATCCTGGTATGGGCCCAT
TCCGTATACGTAGTCCTATACAATGATATGAGATACATTAGCGATAAAACAAGAACGATAAATA
AATACCTATTGTCGAAGCAAAAATAACACACCGATCTGCTTGTAGTTACATATACATGCATCTC
GACAACAACATAGAATGGTCGAAACGGGTACCACCCCCTATGTGCGAGATGTCCCTCTTCTTCC
CCCTTCGATTTGATGATCTTTTTTATGTGCGAGATGCTCCTTCAAACGTGTACCACCCCCTCCG
CTCTTAGTTTCTCTACAATATTTTCTCTTGAAACCCGTGCTAACCTTCTCTCCATGCTCCTAGA
CAATGTCCGACATGCCTCCTATAAATAAGAAGACATAATATCATGTAACAAGAGTAGAATAAAA
ACATATAACTTGTAGCAAATGGCATATTAACATAAAACATCGAAACATATTTACTAACAAAAAC
ATAAACCATCTGACAATAACTAAATATTAACATGACACAAGCAAATGAGTTAGGTCTTAGCATA
GAACTATGTATTAACACGAACAAATGGACCTACACACTACACATATATTAACAATACTAACATA
TATATAACTAAATACTAACATATATAACTATATATTAATAGTACTAATATATAACTAGTAGGCT
ACAATACACCTAACTTTTGATGATGTAAAAAAAATCTAAAACCCTAAACATCACAAAACCAAAT
CTGGGCACTAAATGATTAAACTAGAACTCAATCATGTCATTAAATCCGGTTTTCCGGTGAAAAC
AGGCGGTGTCGGGTGTGGTAATTAGGCGTACTCAGATTACACCCCTAAAACACACTTAACCACT
AAAAACACCATCAAGGTACGAAGGATCGTAAGCCGCGCTTCGCCCAAGGCCCCCCTCAGGGGTC
TCCACAGACTCCGCCTCGCCCGAGCCTGTCCTCGGACGGGGTGTGTTCTCGAGAGAATCCTCGT
CCCGGTCGAGGTCCCCTCACCCCAGAACGACAGTCTCCGCCTCGCCCGAGCCCACCTCGGGTAA
GGGAGACAAAACCCAGGGCGAGACTCAGCTGAAGTCTGCCGGGGACAACAACATTCAATGCGCA
TACCTAACCCACATAGGGCTGCAGGTGTGCAGGAGTAACAAGACCACAGTCTAGTCAAAGATTC
ACCAACTATGATTACGCATGCGACCACTGTTCCTGTACGCCGTCTGCCAACTCCTGACGGGACA
TACAATACGACAAGGGTACAGGCTAGCCCTCGGGCGTAAACTTCGTTTCGCCCGAAGTAGAACT
CGGCCTCGGGATAAACTCGGCTCGCTCGAGCCCGGTCTCGGCTACCTACTCCCCATGAACCCCG
CAGGAGGCCACTCCTTCAACTGTGGCACACGTTTTCGAATCTCAGAATGGGCTCAGTCGCGATC
TCGGACGGACTACCACCTCGCCCGAGCTCGGCTCTGACCTCGATATCTGCAACGGGAAGGCGCC
CAACGTCATCAGACACTGCAGAACTGACACACTACTCGGGATGAAAACGGTTTCGGAATTTTTC
GGTATTCTGGAAACCGATTTCGAAATTTTTCGATCGGATTCACCGGTAACAGTATTTTTTCAAA
AACGGAATCGGTTTTTGGAATTTTCTATCAGAATCGGTATCGGAATCGGCGTGGTGTTTTACCG
ACCGTTTCCTTCGGTTACCGGTTTTGTCGGAAATTACCGGATTTGTGTCTCAGAATTTTCCGGA
ATTGTGTCTCGGAATTTTTTTCGGAATTTTCCGGCATGTGATTTTTTGGCATCGCCTGTACGTC
TCTGGATAAAGATTACTTATTTTTGTATTTTTTGGACGCCTTAAGATTTTTTTTGGATAGATGG
CGTTGGAAGGCTGTTGAGATTAACGATTTGGTCTCTCGAACGAATCCACCCTTTTCTATGCACA
TGTTATGTATTAGTAATATATAATGATAGAGAGCCGACAGTCTGTCTTTTCCACACACTAGATT
TTAGGGTTTTCCTGTGAGGCTGTGAAAAAACTCTTTATGTGAGGAAAAAATATTTCATGAGTAA
GCATGCCATGTCAGCTAAATCGAGTGGATATTGTGAATTGTGAACTTTGAGTCTGTGAACTTGT
GATCTTTATGAACTTTTATATTGTGAACTTGTTATATCATGAATTGTGAACTTGTGGTCTTTGT
GATCTTTTGCCAACTTTGTTGTATTGTGAAGTTTGATATGTTTACCGATCATATTTTAGATTTC
GACCGTTACCAGTGTATTTTCCGCACCGAACTTTCGTTTCCGATGTTTCTGAAATACCGATATT
GTTTCCGTTTCCGGAGTTACCGTTTTCGATTTTATTTCTGATAAAAAATATGAAAACATTAATG
GTTTTAGTGTTTACCGTCTGTTTCCGACCGTTTTCATCCCTACACACTACTTAAAGGGCTTTTC
CCATACTTGGTACTGTGTCAACCACTACAGTATGAGCAACCCCCTCGCCAGGAGGGCTTGGATA
CGTGATCGAACCCTCGGCCCTGGCCTCGGCTCTCAGCAGAAATCAAGCATGCACAAGTCAACAA
CAAGTACAAGGTCATAACTCTAGACCATACCGTCTACAGGACCACAGTGACACCTCCTCACAGT
GTGCGGCCACCTCCAGTACTCCGGGCAACCCCTTCTGAGGCTATAAATAGGATAGCCTATGGCT
TCAGGAGGGCAGACGAACACTTCCCCGTTTTCTCCTCCACCACGGTATTGACACTTTCCTCAAT
CAATCCAGGGACTTGGGATCGTTCTCTCTCCCGCTCAAGTTGTATTCTCTACTACAAGCACTTA
TGTGCAAGTAATATAAGGTAGTGTTTGGTTGAAGAGCCAAGTAGAACGGAGCCGTTCTGTCCCA
GTTTTGTTGTTGTTTGGTTACAAAGTAACTAGAACGGAGTGGCTCCAATTAGGGAATATTCTCC
TCATATCCGGAACCATCCCGCTCCAAAAAATCAACCGGACGGAGCCGCTCCGTTCCCAGCCCGC
TCGCACAGTCACGCTTCGTTCCGTTCACTCTGCAACCAAACAAAAAACAGAGCCGCTCCATTCC
AGATTACCAAACACAGAACAGAGCGGCCCCGTTCCTAGAATCAGGGATGGAACGGTTCCGTTCT
ACTTGGCTCCTCAACCAAACACTACCTAAGTCTCATCCCCCTCTACTGGAAGCAGGACCTCTTC
TTGCTCGAACCATGATAAAAGACTTGTGTCAACTTGCATCACCATCTGAGTTAGGAGCACGCAG
CATTATTTCACTGGTTGGTTAGGTCCTCGGGTCCAAACAACGACAGGCGGTTTACCCAAGCAAA
CGGACGGTTTATCGCCGACTTGAGGTGGTTAGCCGTCGGCTTAGCAGATCTGTGGTAACGGGTC
TAAAAGTTTTCTATTTTTAATGGGCTAAACGAGACTAAATTTGAATATCTTATATATCATATGA
CTCATGAGAGGATGTAGTTTTTATCATAATTTTCCCCATTTTATAATTTTTTTTCTTCAAAATT
TTCAAGTTTTGGCCGAAATTTGAAATTAAACCGGTGGAAAACCGATACCGCGCCTCGGCGTGTT
CGGTAAACCGCTCGGTTTACCGGTGATTATCCTCGGTTTTGTTAACCTTGGTTTGGGTTGCTAA
TATCGGTTTCTGGTTTTCTATTTAGGTCTATTAGCAGGGCCATGGATGAGCTCGGAACAGGGCC
TCAGTATGACACGACAGCCTTAGACAGGCTCAAGCATTACTTGACTGAATGCATTGCAAAATAT
GGGGATGACTACCAATACTCCACTGATCCACGGTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.090314378
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b