Detail information of Zm00001d054003_circ_g.1


General Information
CircRNA Name Zm00001d054003_circ_g.1
ID in PlantcircBase zma_circ_001850
Alias circ2320
Organism Zea mays
Position chr4: 244912532-244912950  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d054003
Parent gene annotation Histone acetyltransferase HAC1
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d054003_T025:2
Zm00001d054003_T009:2
Zm00001d054003_T002:2
Zm00001d054003_T005:2
Zm00001d054003_T029:2
Zm00001d054003_T012:2
Zm00001d054003_T048:2
Zm00001d054003_T020:2
Zm00001d054003_T023:2
Zm00001d054003_T006:2
Zm00001d054003_T003:2
Zm00001d054003_T010:2
Zm00001d054003_T021:2
Zm00001d054003_T014:2
Zm00001d054003_T044:2
Zm00001d054003_T018:2
Zm00001d054003_T008:2
Zm00001d054003_T042:2
Zm00001d054003_T017:2
Zm00001d054003_T015:2
Zm00001d054003_T004:2
Zm00001d054003_T011:2
Zm00001d054003_T007:2
Zm00001d054003_T013:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTGTCTTCTTGAAAAATTTCCAAAAAACGTGGTTTAACCTCCAGCTTTTTATCCACTGATGA
AACAACTCTGACCACAAGTCCTTCCGCTCCAGGAATccagaatttcatggtatacatatgtacg
caaggcctctccggatactgttttaatctcaggtctaaagtacttaacagaatccaagtatgac
aaataaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGAATTTCATGGTATACATATGTACGCAAGGCCTCTCCGGATACTGTTTTAATCTCAGGTCT
AAAGTACTTAACAGAATCCAAGTATGACAAATAAACACGGCGCTGGTTCGGGGAAGAGCATTCT
GCACCAAATTCTTGAACATACATGCCAAATAGACATACTTCCACACCTTCTATTCTCTGGAACA
AGAGAACAGCCTGTCCAACATTTCATAAAAAATAGTGTTGCAGAAATTAGTGAGTGTAACTACG
ATTCATGCTTCAAATGACAAGAATGAATTCTTACCTTGGACTTGTAAGGGAACTCTGTAGGGTA
GTTGTCTTCTTGAAAAATTTCCAAAAAACGTGGTTTAACCTCCAGCTTTTTATCCACTGATGAA
ACAACTCTGACCACAAGTCCTTCCGCTCCAGGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.221111874
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b