Detail information of GLYMA_14G161400_circ_g.1


General Information
CircRNA Name GLYMA_14G161400_circ_g.1
ID in PlantcircBase gma_circ_007125
Alias gma-circRNA1978
Organism Glycine max
Position chr14: 38185134-38189969  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method find_circ
Parent gene GLYMA_14G161400
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing GLYMA_14G161400_circ_g.2 GLYMA_14G161400_circ_g.3 GLYMA_14G161400_circ_g.4
Support reads NA
Tissues flower bud
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered KRH16547:4
KRH16546:4
KRH16548:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATATTATAGTCCTAGAATCTCCAACATTTGCTACATAAAGATGGTTATCAACCAAAACTGC
TGTCGAAGCTGTAGATCCATCATCCCTGAAGGTGTCatcattctgtactacatcccagagtcca
tcacttgcaagaataatcagttcaatttgttcatctatctcctggtcctgaaagtatatgaaag
ataaatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCATTCTGTACTACATCCCAGAGTCCATCACTTGCAAGAATAATCAGTTCAATTTGTTCATCT
ATCTCCTGGTCCTGAAAGTATATGAAAGATAAATTACTTTGTCAAACTATTACCGCTTGTCACT
TTAACATCGCTCCAACAAAATATGCCTAAATCACACATGGCTCCAACAATATATTAAATATATG
CACATGATAAGTTTACTAGTCCAGACTAAACCTATAAAGACAACTCGGTAAAAGAAATTACCTT
ATACACATGATTTTATTGATTTTTTGAACAGTCTATTAACAGACTACTAACTAGAAAAAGCAGA
CTATTTTCACATATTGAGGGTCTTTGGGTGCTTTACATTTTGTGTTTGGTTAGAATATCTCAGT
AAATCTTCAAAAGCTATTGTGGAACCCCTTAGATATCTAATTGAGGAAACAATCCTAAAGAGTT
GCTTCTTTATTTTATTATGTTTCGATATTTGTTTCCTTATGAGATTTTAGGTATTCAGGGAAAA
AATCAAGAAAAGAAAGACCCATAATTCTTTGTTGGATTGAGTGCTTACTACTAAGCCAAAAGTT
ATAGCTGATAGTTAGGGCGCAACTCTTTCTACTTAAAAGCATAACAGCCCAAGCGCCATGAGTT
GACTGTGACTTGACCCACCTGAGCCTCCACCACGGGACAATTGATGCCACAACCCGGCAAACAT
TCTTAATATCCATTCACCATAATCATCTCATGACAGAAGAAGCTGACAGTGGAGACAACCAGTG
GAGGAGACAGCCAGAGTATAGAACAAGTCAAGGATACTCTTCAAACTTCTGAAAGGAGGACATG
GCAACTGGAAAACTGTTTGAAACATGGTAGAAAAATGCACAGCAGAAATCATATACAGCAGAAA
AACATGGGTGTTCAACATTGGAGATGTCACAACAATGAACTACTGCCAAAGTACAGGCGATTAG
TGACCTGACCAGAGATGCTTTTCTGACTAGAGAAGAAAAATACTGGAAAGATAAACCAGCAGGA
GAGATGACTAATTTGAAAGAAGAATTGTGAAAGGAAAATAGAACTCCAAATTTTAGGAAGCTTG
ACAACTACGTCAGTAGCGACAAATTTGAAAGAAGAATCAGGGAAATTAAGTAGAAATTGGAATT
TTAGGAAGCTCGGTAGCGGAATAGTGATGGGATAGGTCATGGAGGATGATATCTATTTGATGCC
ATGCTGAAATTCTGGGATTTTGGTATTGAGGGAAGAAATTGAGCAAAGAAAGACTTCCAATAAT
ATTCTCTTTATATTGTGATTATGTATTTATGTTGTTCATGTTTAAAAAAACCTAAAGCACTAAT
CCTTATTTATATTAATCATACAATATTACTCATATTAGGAAACATGGAAACTAATTCCAAGCTA
TAATCTTTAATATACCCTGAAATATGAAAATACAATCTAGATCATAGTTATAAATCTCAAATGG
CGGCGCATATAGTTGGAAGCAAAATGACCAATATTTTGAATATCATAATTATAATACAAACTAA
ATAATTTATACTACACATAAATACTTAAAAAAACAAAATTTAGAAATTTCCTGATAAATAAATA
ACAAGTCACAGTTTACACATACACATCATCAATCTAGGAGAAATAAGAACATAGTAATGAAGTA
CAAAAAAAGTTAAAGATGTTGGTAAAATTAACAGAAAAGGAACATAAATTAGATAAAAATTAGT
AAAATCTGAATTGCGAAGTTTAAAGGAAGAAGAAAGAATGAAACACAGGAAAGAAATAGTCCTA
TACAGTATGAAAGAACAGAGGTAACTCTTTGTGGAATGGTCAAGGAAAGGTATTAAGTTTCTAA
AGCGAAAAATCATCAGAAATTGGGAGAGCAATCACAATTTTAACCAAAAAAAGACCTAAAATAC
ATTGTTTTAGGGGGTAAAATTGGGTTTTCAAAACCCATATCATGGTAGTGCAGCTATAGCACGT
GAAAAGCTACTATTTTGGCTGTGCTATTGCAGCTGCAATGGCACTATTGGAAATGAATCTGTTA
TTTGAATCCAATAACAAACTAGGTCCGCTCCAATACTCCACTATAGTGCCACTATAGCGCGCCA
TTGATTACTACAATCTAGATATTATTGGATGCTCTAAAGTCTGAATCATGCTATGATACTCTAA
GATACTATGATATGACCAAGTAATTATTGGATATTTTCCTATGTTCTTACAGGAATTACATTGT
ATTAGTGGGCTGTTCATTTTTTCTCTCTCTAATTGTTAATATCTTTCCCTTGATTTGATTTACT
TCAGTAATTCTTTTGTCAATAATCACATGATAAAAAAAGGACCTTCCTAATCACAAGTAAAAGA
CTAATTAGTAACTTCTAAATTAATAACAGGTGTTCAAACTTTGATACATGTCTTTGTAATACGA
TTATGCTTGTATTATACTCATTAATAAATAGAGTACTTAATTTGGCCCCTGAAAGCTAGAATTA
TATCATTATTAAACTTTATTCTACTAAGTTATTCCCTTGTAAAAGTAGAAAGTTACTAATTATC
CATACAGTGAAAATAATTATTAGAGTGAATCATATCTAGCTATAAACTTTCAGGTTGCAAACAG
TAATCAAGGATCACCTGGATCTCAGGTTCTGCTACTACAAACTGCTTCAGCATACGGTTACCAA
AGGCACGAGACATTGCTAGCACCCCTCCAACCCTCCAAGTACCTGACCAGAAAAATAAACAAAT
GTAAAATCACATGCCCAAACTAAACATTTCATCCTTTGGATTGTTGACCTGGTTTTAAGGTGAA
GATATGAAGCATGTTTCCATTTATGTATAAGTTCAGAACATGGATACTATTTGTATAAATCAAT
CTAATGTTTAAGTTTATTTGTCCTGAAGCACAGCAGGTATCATCCACTTAATTACTGTCCACAT
GCCCGGAACACATATCGATGCATGATAGTAAAAAATGTGATATTATATTCTTGTTCATACAAGA
TCACATGGGATTTTGGTGGCAGCCAGCAATCGTATCATGCTCAAATTTGTTCTCGAGAGATTGT
GTAGGATCAACATGTTTTCAAACAATCCCACCATGTAGACTAGAAAGCCCATTTGTGAAAATGG
CCAGAGAACCAACCCAATTTTAAAAACCCTTCAATCCATGTTTCCTCCTCCCATTTTGACTTGC
CCCTTTGCATTCAAACCCTGCAGCCTCTTGTGCTGACCTTCTACAAACAAGACTCGGTGATGGC
AATTTGATCTCTTTTCTGCTGCTGCTCGGTTTGTTCTGCTACAAGGCTTCCTGATCTGCTTGTT
CCCCCACAGTCTCTGATCTGCTTGATTTGATATTCTTTGGGTGCTGGTCCAGCTAGGTTTTTGG
TTTAAATTTTAATCAACTCCTGGCCATTTGGATACTGCATTGGTTTCCTCTCCTTCCAGCTTCT
CTATGTTGGTGCTGGTTTGACTGGGGTTTTGTTTCTCTGGTCTGTTTTGCTGCACTGAATAATT
TGCTAGAGTAGAGAAGAGATCTAGAGTTGGACTGTTTTCTTATGGTGTTTTGAGTTTTATTTGG
CATATGCCATCTATATTTGAAGTTAAACTGCAACTTAAGCTTATGTTCTGAGTTTGTGACTTAT
ATAAGTCATATGTGAGTGTGACCTTATCCTCTTTCAGTGTATGTTTTAACTAAATGTTAGTAGC
AATTCTTATTTATGTTATATGCAGTTATGCACAAAAAATTATGTATGGATATAATTTTGTATTT
TAGACAGGAACATACTGTCCATATTATTACACAACTTAAGTGTTCCCTCTGCCTTTCTAATCCA
ATCCAAGGTAGGATCTTTTGGCTACCTTGTACCAATTTGATAATGACATATATTTTGTTCAAGA
GTAGCAAAAGAAAATTTAATAAAAGGACTGAATCACTAAACTTCTATAAATTTCCATGTACTCA
TACGATAGAATAAGAGATAACAAACTTTTTACAGATAAAAGGTGGGCAAATATTTGGCATGGCC
ATCAGCCAAAACATAATTCCATGCATATTATTATGCCAAGTTGCCAATATAACCCCTGATAAAA
ATGATCCAAGATAGAGTCAGCTCAAGCTTCTAAGGTCAACATCAAATCTCAACTCTGGCCAAAG
ATAACATGGGAAATCCCCAAAACTGACCCATCCCCAGTGTATGTTGCACTAAATGTGGCAGAAG
CAGAATATCACAACAGAACTATAATGATGCTATTTATATGCCTGAAATATTGTATCTCACCTGC
CCACATGACAACACCACCAGCATTCTCGATTCTCTTCCGCTCATCACTTCTATTTGGTTTATGA
TCCTCAGAGAGAGCATTTGCTGCCAAAATAAAAAAAATTAATTCAAGATACCAATCTTATTTCC
AAAATGTATTCAAATGGAACTGTAGGAGAAAATTTATCATATGACCAGACAAGGACTCTTGTCT
GAAATGCTGTATCTTCCACATGATCTCTGTATTTACATTATCAAGCAGCTTTTCCCCAACATCA
CATCATTAAGATATAAACACTTTTTTCCATTTTAAAAAAAGAAATTTGACAAATATAATACCAA
ATACTGCATCAGAATCTATAAATGATATGAGAATTTAAACTCCACCTATATTATTGTTAATTAA
TAGTGACAACAAATTGAAGATATCATAAAATAGTAGGTTATATAATTAGTACCTTTACCAGCTT
TTGATATTATAGTCCTAGAATCTCCAACATTTGCTACATAAAGATGGTTATCAACCAAAACTGC
TGTCGAAGCTGTAGATCCATCATCCCTGAAGGTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.00816789
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2018