Plant Circular RNA Database

Detail information of Os07g0648266_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os07g0648266_circ_g.4
					
						ID in PlantcircBase
						osa_circ_035041
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 27073576-27075436  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0648266						
					
						Parent gene annotation
						
							Similar to 2-oxo acid dehydrogenase, lipoyl-binding site. (Os07t
0648266-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0648266_circ_g.5 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0648266-00:5

General Information
CircRNA Name	Os07g0648266_circ_g.4
ID in PlantcircBase	osa_circ_035041
Alias	NA
Organism	Oryza sativa
Position	chr7: 27073576-27075436 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0648266
Parent gene annotation	Similar to 2-oxo acid dehydrogenase, lipoyl-binding site. (Os07t 0648266-00)
Parent gene strand	+
Alternative splicing	Os07g0648266_circ_g.5
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0648266-00:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCATGGTTATCGTAGGAAATCTCTTCTTGATGTTCTCACTCGATACAATGTCCCATTATTAAGA
GCAACATGGTTTGTGAAAGTCACGTACCTCAATCAGgcttggaccacctgattactatcctcaa
acaccaaactgtcctgaagagacattgacaaaagaatatgtacaatctgggtataaggagaccg
ttgaagga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 490
Transcript exons: 27073576-27073681,27073834-27073905,27074588-27074641,27
074727-27074834,27075287-27075436
GCTTGGACCACCTGATTACTATCCTCAAACACCAAACTGTCCTGAAGAGACATTGACAAAAGAA
TATGTACAATCTGGGTATAAGGAGACCGTTGAAGGAATTGAGGAAGCCAGAGAGATTGTACTTA
GCCAGATCCCGTACTTCTGCAAGACAGATATTGTTGTAAAATGCAAAGAGGCACTAAAGAAGCG
CTTGAGAGCTATAAATGACTCTCGTGCTCAGAAGAGAAAGGCTGGCCAAGTTTATGGAGTTCCT
CTTTTTGGATCACTGTTGATAAAACCTGGAGTTTATCCAGAGCAAAGACCATGTAACGAGGACA
CCCGCAGGAAATGGGCCGAGGCCCTTTCCCAGCCAAACAAGCGACTGCGTTCATTATCTGAACA
TGTTCCTCATGGTTATCGTAGGAAATCTCTTCTTGATGTTCTCACTCGATACAATGTCCCATTA
TTAAGAGCAACATGGTTTGTGAAAGTCACGTACCTCAATCAG
						
					

						Genomic sequence
						
							GCTTGGACCACCTGATTACTATCCTCAAACACCAAACTGTCCTGAAGAGACATTGACAAAAGAA
TATGTACAATCTGGGTATAAGGAGACCGTTGAAGGAATTGAGGTGCGTATGGAGATGAATGTTG
TATACAATGTATTATGAGTTTGAATCCAATTAGAAATTCATTAATGTATCTATCTGTGCTATGC
TTATTGAGTTTGGATATAGTCCAATCTTGTATATTGACTGATTCAGTTTTTTCTTGGGATTCAT
AGGAAGCCAGAGAGATTGTACTTAGCCAGATCCCGTACTTCTGCAAGACAGATATTGTTGTAAA
ATGCAAAGAGGTGAGGAAACTTGGCCAATATTTTCTCAGTAAGCTCGTGGCATGATCTTATTTT
GCCATTGTGTTTCGGAAGAAATACGAAAAATTCTTTGCAATAGCAAATGGATTGACAGTTCATG
GTAACAAAGAGACAAATTGCCACTGGCACCAACCTTATATTCCAATGTTCTGTATATCAATTTG
GCATCTAGGCATAATTTGTTGCCTGGCTGGTTTACTACCCATGCTATTTGATTACCTTGACTTA
CTGGAGATTAATCTGATATCCTTTAGTTATAAAGTGTCACCGACTATTAGGACTAAATCTCAGA
ACTTATTCCATCCTGCAAGGATAGTTAGTCTAGTGATTATTAAGTCTTTATCAACAATTGATTC
TGGCTTGCACAGTTGTACCAGCTATCATCAGGTGCAAACATTTAGGCAAAAAAGTTGCTGTAGA
TTGTGGGTTGTGTGTTTCTGTTCTCTTTTAGGAAATCTTGTTTCTCTCGTAATCTCAAATATGT
ATGTTGAAGATGTAGTTCTTTAAATGTTGTAAGACACCACAACTATAAATGCATGGATACATTT
AATTAACATGGTTGATTGGTAGCTTCATCCTTTTGTTTTTATTTTATGATCTGTTTTGATGTAT
GATATAGAGTACTTAGTATAACATTTAACAATTTCTTCATTATTTGCTGAAGGCACTAAAGAAG
CGCTTGAGAGCTATAAATGACTCTCGTGCTCAGAAGAGAAAGGTAGTTGTGCAATATTTCTTGA
TTTGGATGTATTTACCTCCTGACATCATATCAAACAGACCAACTAATTTTCCTGTTTTAGCAGG
CTGGCCAAGTTTATGGAGTTCCTCTTTTTGGATCACTGTTGATAAAACCTGGAGTTTATCCAGA
GCAAAGACCATGTAACGAGGACACCCGCAGGAAATGGGCCGAGGTCGACATACTTGCCTGTTAT
CTGTTTTCACATGCTTTTTTCAATGGAACTGTTGGCATAATTTATGAACTGTCATTTAAGTTTT
CTTGCACTTTTATCTTGAGCTTGTCGCTAGTTAATACTTAACTTTTCTGCTCTAGTTTGAATCT
TCTTTTTTTAGGAATTATGGGTTTAGCATACAATCGATTAGAAACTTTATTTTTTGCTTGGTGT
TGCTTTGACTTTAAACTGCTTATTATTGTTTGAAGTCAAGGGTCAAGTTTGTGTGAGGCAGACC
TCCCTTAATGCATCTTATCATCTCATCGGTTGGAACAATGCAAGTCAAATAACCTAAGAAAATT
GAGTTATTTTGTTTACAGACATCATTTTCTACTTCTGTGATATCACTGCTGCCATGTATCTGGC
TATCTGCCCATTTTAACTTTTTGATTACATGTGCCATCGCCATGCAGGCCCTTTCCCAGCCAAA
CAAGCGACTGCGTTCATTATCTGAACATGTTCCTCATGGTTATCGTAGGAAATCTCTTCTTGAT
GTTCTCACTCGATACAATGTCCCATTATTAAGAGCAACATGGTTTGTGAAAGTCACGTACCTCA
ATCAG
						
					

			
		

Sequences
Splice junction sequence	TCATGGTTATCGTAGGAAATCTCTTCTTGATGTTCTCACTCGATACAATGTCCCATTATTAAGA GCAACATGGTTTGTGAAAGTCACGTACCTCAATCAGgcttggaccacctgattactatcctcaa acaccaaactgtcctgaagagacattgacaaaagaatatgtacaatctgggtataaggagaccg ttgaagga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 490 Transcript exons: 27073576-27073681,27073834-27073905,27074588-27074641,27 074727-27074834,27075287-27075436 GCTTGGACCACCTGATTACTATCCTCAAACACCAAACTGTCCTGAAGAGACATTGACAAAAGAA TATGTACAATCTGGGTATAAGGAGACCGTTGAAGGAATTGAGGAAGCCAGAGAGATTGTACTTA GCCAGATCCCGTACTTCTGCAAGACAGATATTGTTGTAAAATGCAAAGAGGCACTAAAGAAGCG CTTGAGAGCTATAAATGACTCTCGTGCTCAGAAGAGAAAGGCTGGCCAAGTTTATGGAGTTCCT CTTTTTGGATCACTGTTGATAAAACCTGGAGTTTATCCAGAGCAAAGACCATGTAACGAGGACA CCCGCAGGAAATGGGCCGAGGCCCTTTCCCAGCCAAACAAGCGACTGCGTTCATTATCTGAACA TGTTCCTCATGGTTATCGTAGGAAATCTCTTCTTGATGTTCTCACTCGATACAATGTCCCATTA TTAAGAGCAACATGGTTTGTGAAAGTCACGTACCTCAATCAG
Genomic sequence	GCTTGGACCACCTGATTACTATCCTCAAACACCAAACTGTCCTGAAGAGACATTGACAAAAGAA TATGTACAATCTGGGTATAAGGAGACCGTTGAAGGAATTGAGGTGCGTATGGAGATGAATGTTG TATACAATGTATTATGAGTTTGAATCCAATTAGAAATTCATTAATGTATCTATCTGTGCTATGC TTATTGAGTTTGGATATAGTCCAATCTTGTATATTGACTGATTCAGTTTTTTCTTGGGATTCAT AGGAAGCCAGAGAGATTGTACTTAGCCAGATCCCGTACTTCTGCAAGACAGATATTGTTGTAAA ATGCAAAGAGGTGAGGAAACTTGGCCAATATTTTCTCAGTAAGCTCGTGGCATGATCTTATTTT GCCATTGTGTTTCGGAAGAAATACGAAAAATTCTTTGCAATAGCAAATGGATTGACAGTTCATG GTAACAAAGAGACAAATTGCCACTGGCACCAACCTTATATTCCAATGTTCTGTATATCAATTTG GCATCTAGGCATAATTTGTTGCCTGGCTGGTTTACTACCCATGCTATTTGATTACCTTGACTTA CTGGAGATTAATCTGATATCCTTTAGTTATAAAGTGTCACCGACTATTAGGACTAAATCTCAGA ACTTATTCCATCCTGCAAGGATAGTTAGTCTAGTGATTATTAAGTCTTTATCAACAATTGATTC TGGCTTGCACAGTTGTACCAGCTATCATCAGGTGCAAACATTTAGGCAAAAAAGTTGCTGTAGA TTGTGGGTTGTGTGTTTCTGTTCTCTTTTAGGAAATCTTGTTTCTCTCGTAATCTCAAATATGT ATGTTGAAGATGTAGTTCTTTAAATGTTGTAAGACACCACAACTATAAATGCATGGATACATTT AATTAACATGGTTGATTGGTAGCTTCATCCTTTTGTTTTTATTTTATGATCTGTTTTGATGTAT GATATAGAGTACTTAGTATAACATTTAACAATTTCTTCATTATTTGCTGAAGGCACTAAAGAAG CGCTTGAGAGCTATAAATGACTCTCGTGCTCAGAAGAGAAAGGTAGTTGTGCAATATTTCTTGA TTTGGATGTATTTACCTCCTGACATCATATCAAACAGACCAACTAATTTTCCTGTTTTAGCAGG CTGGCCAAGTTTATGGAGTTCCTCTTTTTGGATCACTGTTGATAAAACCTGGAGTTTATCCAGA GCAAAGACCATGTAACGAGGACACCCGCAGGAAATGGGCCGAGGTCGACATACTTGCCTGTTAT CTGTTTTCACATGCTTTTTTCAATGGAACTGTTGGCATAATTTATGAACTGTCATTTAAGTTTT CTTGCACTTTTATCTTGAGCTTGTCGCTAGTTAATACTTAACTTTTCTGCTCTAGTTTGAATCT TCTTTTTTTAGGAATTATGGGTTTAGCATACAATCGATTAGAAACTTTATTTTTTGCTTGGTGT TGCTTTGACTTTAAACTGCTTATTATTGTTTGAAGTCAAGGGTCAAGTTTGTGTGAGGCAGACC TCCCTTAATGCATCTTATCATCTCATCGGTTGGAACAATGCAAGTCAAATAACCTAAGAAAATT GAGTTATTTTGTTTACAGACATCATTTTCTACTTCTGTGATATCACTGCTGCCATGTATCTGGC TATCTGCCCATTTTAACTTTTTGATTACATGTGCCATCGCCATGCAGGCCCTTTCCCAGCCAAA CAAGCGACTGCGTTCATTATCTGAACATGTTCCTCATGGTTATCGTAGGAAATCTCTTCTTGAT GTTCTCACTCGATACAATGTCCCATTATTAAGAGCAACATGGTTTGTGAAAGTCACGTACCTCA ATCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.212776943

Conservation Information
Conserved circRNAs	NA
PMCS	0.212776943

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27075407-27073628(+)
						
						Potential amino acid sequence
						
							MVCESHVPQSGLDHLITILKHQTVLKRH*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27075407-27073628(+)
Potential amino acid sequence	MVCESHVPQSGLDHLITILKHQTVLKRH*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0648266_circ_g.4

Address

Any questions?

Supported by