Detail information of BGIOSGA024701_circ_igg.1


General Information
CircRNA Name BGIOSGA024701_circ_igg.1
ID in PlantcircBase osi_circ_017600
Alias Chr07:4463022_4464331(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 4466249-4467555  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA024701_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCCGGCCTCCTTGGCCTTGGTCATCTGGGCGTCGAACTCGTCCTTGTTGTGGCAGGCGATCA
CGACTCCCTCCTCGGCGGCCATTGCTCTCTCTCCTCccttcaggaagacagcaccagggaactt
tttggcgtattcagcgaacactggggcgatgaagcggcaagggccacaccaggaagcagtgaag
tcaattat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCAGGAAGACAGCACCAGGGAACTTTTTGGCGTATTCAGCGAACACTGGGGCGATGAAGCG
GCAAGGGCCACACCAGGAAGCAGTGAAGTCAATTATGACCTGTAGATCAAACAGTCCAGAAAAG
GCCATCATTAGGGATGGAAACATGACATGAACAAATGGTCAATTGCGCAGTAAGAAAGAATAAC
GGTAGCCTCACAGTTATTGGCATGACAAGCATAAGTACCACTAGTTCAGAATTTCATACTAGAT
AAATATTCTTTGGCAACCTTGTTGTTGTTGCACAGAAAGAAAATAAATCCAAGAACCATTGATA
ATTCCATAGACAACAATATATCAGCCTGGTAAGTGCTAACTACTCTTGATCAAAATCCTCGTTG
ATGCCGCACAGCAAGAAACCAAATCTAATACAGTTCAAATATAATACTCTTGGTCAAAATCCTC
GTTTATGCCGCGCAGCAAGAAACCAAATCCAATACTACAGGGCGGACGCTTATCTGTACAAAGC
ATCACATCATAACAATGCCAAGACATGTGAAGTGGCAATCTATTGTCCATAACAACAATTGAAC
TAGATTAGAACCAGATTTCCTTCAACTCTGGCGAATCATGTCAAATTATAGTACTATTTAAGAA
TATATCTATATATTTAAACAAAGCTTATACTCAAATTAGAGAATCATCAGCATGAAACAACTGG
AGCAAACCTAAACATCACATCACACCATCCCATCTTACGGTAAATTTAAACACTAACAATTTCG
CCTATGGAGTCAAATACTATACAGATAGCGGATGAAAATTCGCTTGCAGATGTAAGCATCAAAT
CGCCCCATCTCATGGTAAAATCCAAACATCAACGATTAATCATGTCAAATACAGAGTGCCCTGT
AATTACTGCAACAGATTTCTTTTAAAAGAATTGTTCATTATATCATCCTAAAATATATTCATGA
AAATCTACTACTAAAATCTCCCCCACCAGAATCGGCAATCCCCAAATCCGCGACAACCCTACGC
CCCAATCGCCAAAATAGAAACAATCGATCTCCTCGCGATTTCACCACATGCCACAAATCTCAGC
AAGAAATTAAATCCTAAATTTCTTCAAAATCCTATCGATCTAAGACGAACCGCGACCCCCTGGT
GAACAAAACCCCAAAAAAAAAATCCCCAAAATTCTGCGCCAGGAAACGTACCACTTTGCCGGCC
TCCTTGGCCTTGGTCATCTGGGCGTCGAACTCGTCCTTGTTGTGGCAGGCGATCACGACTCCCT
CCTCGGCGGCCATTGCTCTCTCTCCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021