Detail information of BGIOSGA033300_circ_ig.1


General Information
CircRNA Name BGIOSGA033300_circ_ig.1
ID in PlantcircBase osi_circ_008618
Alias Chr10:22112792_22114645(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19235775-19237629  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACGCAGGTCGCCGTGCCGGTGTCTGTCCTCCCGCGACGGCGGAGACGTCCGGCCGCCGCCGGC
GACCGAAGCTTCACCGTTTTCCATCCTAACCCACCGggtatcttgttataaagcagattgctgg
gtgattatttcagagtaattggggcatgatttggacaagtctcaagcaggtgaccgcaccgcac
gcacgcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATCTTGTTATAAAGCAGATTGCTGGGTGATTATTTCAGAGTAATTGGGGCATGATTTGGAC
AAGTCTCAAGCAGGTGACCGCACCGCACGCACGCGCTAATGATCAGTGTACTGGAGTACTGGTG
AATGGGTGATGATTGTGCAGGTAAACGGGCGTAATCCGCGAGTGTTACGCGGCTGGTGATCGGT
CCCCTTCGCCTTTTGCTACAGGTGACGGGCGATCAAGTGATCAACACATGCGTTGTTGATCCGG
GAAAAGGGGTTTGCTTGGCCCAGCGAGAAGACAGATGAGCGAGTGATGGCTGGTGATTGAGCAC
CGCTGCGTGCGTCGATTCCGAATGCTTGTCTCATCTGCCACGGCAGTAAAAGCCAAAGGTAAAT
ATACCTCATATAATAACCAGAGATGTGATATATTAGTACTATCGTAAATTTGTTTTTCACAATC
CCACGTATATCAATATAAAACCAAAAAGACTTAGAATATTCATACTCTATCAAAATCTCAATGC
AATTATTCATCACTTTGTATACTCTCAATACAATGATTTTCTACTTTCACAAACTCCGATACAA
TAATTACTCTAAAAATAATCTTATTTTGGAACAAATGAAATGAGCTTAAAAATAAATTTATCAT
GGGACAAGGAAGTAACATTTAGGTAATATTTTTTTAGATGATTTATTGAAAGAATTTTTGAAAA
GGCACTATTTTGTCCTTAAAAAAGGTCAATTCTAACTATAAACCTGAACATACATGTATCCAGG
TTAGCTAGGATTAGATTTTTTTTATAGGGCGGTTTGGTACACTGCAAGATGTAAAAGAAAGATT
TGCAATGTGATCGAGTGTAGTAAACGTATAAAAGAGGATAATATGATATATTCCCTCTGTTCTT
AAAATATAACAATTTTTAATATTTTAAGTTTGTCCCAAATAAAACCTCTTCACCGTTCCATTCT
TAACCAGTCACACTTTTCACAATTAAAATTCTCCATCACTCTTCTCTCCTCAACCATCATAAAC
TTATTCTATTTAATTTCACGTATTTTCTTAATTAATATTTGTATCCTTACCTAAAACTCCTTAC
ATTTTAAGAGAGAGGTGATATTATGTACTTCCTTCATTTCAAAATAAACAAACTATATAGGATA
TGCCATATTTTTATTATTATTACGAATGTTTCAGGGACCACCTATATATTTGTCGACAAATTTT
TTTCTAAAAATTTAACAGATATAATTATAGTACAATCGTAGTGTAATTACACTGTAACTTGCAT
GTAACTACAGTGCAACTTGTATATAAGTTTCACGTAATTTTGAATCGTTAGATCTATTACAATA
TTTGTTCTAGTGAGGAAGAAAAAAAATCACAACACACACATATGTGAAAGGATTTGTTCCCATG
ACCTCCATTTTACCGAAATAACATGTTACGGAGAGATTTTTTGATAGTTACGTACAAGTTACAT
TATAGTTACAGTGTAATTACATGCAAGTTATAATGTAATTACACTACGATTATACTGTAATTAC
ATCCGTCAAATTTTTGGAAGAAAATTTGTCGACAAATATATAGCAAAATTGTTTCACAAGAACT
ACGACACGTGCCGTTCCATCGAAGCCTTTTTAGCATCTGAACTAACCCACTACGAAATTTCAGG
GTCCAAAGGCCAGCAAACCGCGGGGAGATCTCGTGGGCTAGAAGACCGTAGCTTTATCCGGCCC
ATTCCAGAAAAGCCCTGCAATACGACGTACGCAGGTCGCCGTGCCGGTGTCTGTCCTCCCGCGA
CGGCGGAGACGTCCGGCCGCCGCCGGCGACCGAAGCTTCACCGTTTTCCATCCTAACCCACCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021