Detail information of AT1G67120_circ_g.9


General Information
CircRNA Name AT1G67120_circ_g.9
ID in PlantcircBase ath_circ_008987
Alias 1:25085351-25087419
Organism Arabidpsis thaliana
Position chr1: 25085351-25087419  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G67120
Parent gene annotation ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatase
s;transcription factor binding
Parent gene strand -
Alternative splicing AT1G67120_circ_g.8 AT1G67120_circ_g.10 AT1G67120_circ_g.11 AT1G67120_circ_g.12 AT1G67120_circ_g.13
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G67120.2:7
AT1G67120.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTGGTCCTAAACTCTCAGTTGCCATGTTGACAAATGCAACCCAGGAGAGGAGATCTCTGAC
AGTAAGCGTTCTCCCAGTATGCAACCTGTTGAACCActctagaacagattgtggggcaaggttc
agttcatctaacaaaacccacgagccttcttttagagcctgtagaaattgcataattgaggatc
tgcaattt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 723
Transcript exons: 25085351-25085416,25085490-25085579,25085662-25085762,25
085845-25085943,25086057-25086198,25086474-25086547,2508
7269-25087419
CTCTAGAACAGATTGTGGGGCAAGGTTCAGTTCATCTAACAAAACCCACGAGCCTTCTTTTAGA
GCCTGCAAGAGAATTCCATCAGACCAAGCAAACTTCATGTCCTCATCACTTTCAACTGGTAAAT
CTGATCCCAGCAAATCCATCATGTCAGTCTGCTCCGATAGATTTATGCGCACAACCTTGTGGCC
AGAATATTTTCCCAACGCCAATATCAGACTAGTTTTTCCAACACCAGGGCTACCTTCTAATAAA
ATTGGTTTTGAAAGCTGCATTGCACGCAATACTCTCAAGACATTCCTGTGGGTAGTTGGTGCTA
AAAACTCGAATCCACCAATCTCAGGATTTTCATCACCTTTGCTTATAAAAAATGGATCGATGCC
AAACATGCCCTCATGTCGAACACTCTTACTTTTTTCACAAATTGCTTTGGAATCACCCCAGCCA
TACAGCTCCATTCTTGAAAGCTCCAAAGGTAGTGTATCGCTAGCAAAAAGCTCAAGTTGTTGTA
ACAGGAAAGCGAAGCATTTTTCTCTCAGATCTTGACCATCCCTTCCAGAGAAACCAGTTCCGAG
ACTTAAACCGTCAAGTAACACGAGAAATGCTCCATGAAGAATAGCATATGCTGGTCCTAAACTC
TCAGTTGCCATGTTGACAAATGCAACCCAGGAGAGGAGATCTCTGACAGTAAGCGTTCTCCCAG
TATGCAACCTGTTGAACCA

Genomic sequence CTCTAGAACAGATTGTGGGGCAAGGTTCAGTTCATCTAACAAAACCCACGAGCCTTCTTTTAGA
GCCTGTAGAAATTGCATAATTGAGGATCTGCAATTTTTAAATTGATACATACTTTTAGATAAAA
CAATCTTTAACCTGCAAGAGAATTCCATCAGACCAAGCAAACTTCATGTCCTCATCACTTTCAA
CTGGTAAATCTGATCCCAGCAAATCCATCATGTCAGTCTGCATCAACAAAACCATAGTTATAGT
ACCCAACAGATTAAGTAGCATACACAGTATTGAAGGCCTGGTGACGAAATCGAACCTGCTCCGA
TAGATTTATGCGCACAACCTTGTGGCCAGAATATTTTCCCAACGCCAATATCAGACTAGTTTTT
CCAACACCAGGGCTACCTTCTAATAAAACTGCAATGGTAAAATAGACCAATATTAAAGCTGACA
TCAATCTCCAAAAACTACCATGATAACCAAAAGTAATGAGACATACTTGGTTTTGAAAGCTGCA
TTGCACGCAATACTCTCAAGACATTCCTGTGGGTAGTTGGTGCTAAAAACTCGAATCCACCAAT
CTCAGGATTTTCATCACCTGAACAGGCAGGTTGTAAGTTCCAAACAAAATCTCATAAATGCTAT
AATCATAGTTGCTATACTTTGACAATATTAAACATATCCTCTGCAGAAAGAACACGAGCAGCTC
ACCTTTGCTTATAAAAAATGGATCGATGCCAAACATGCCCTCATGTCGAACACTCTTACTTTTT
TCACAAATTGCTTTGGAATCACCCCAGCCATACAGCTCCATTCTTGAAAGCTCCAAAGGTAGTG
TATCGCTAGCAAAAAGCTGAACCAGAAAAGTCAGATACTCAGATGGATGCGACATGATGAGACA
TTCGTAGTCGAACAACGAGCATCACTATGTGTTGAGGACTAAAGACGATATAAGTCACACAGTT
AAGAATTTAAAGATGCTACGAAAACGTTTTTGTTCTATAGCAAACCGAACTGATTTACTGGAAT
AACATTCAACATATGCCACTAGAGAAAACTTGGCGAGTTTGTGTTGCCAGAAAACAACAAAAAT
AAAGAGATATATTGTATCATCAAGATTGAAATTACCTCAAGTTGTTGTAACAGGAAAGCGAAGC
ATTTTTCTCTCAGATCTTGACCATCCCTTCCAGAGAAACCAGTTCCTTGCAAAACATAAAAAAA
AAAGAGGTTAATCAATCATACACGCTGGGTAAAGATATATGAAAGCAATACCACTCAAACTCAG
CTAATGAAGATGAAATACCAATAAAGTTGGATATCCTAAACTCAGTAAATCCAACGACAGAAAC
TACATAACACAAGTTGTAGATTCAGCTAGTGAAGATGGAATACCATTATATTCGAATACCCAAT
TCAACAAATTACATGAAACGATATTTGCATGAATTTATATAACAAACGATCAAGGTAGACCTAT
TCAAACTTTTAGATGTTTGATATATTCCAGTGTACTTATATCATTACGTCAAAGACAGACCAGT
CAAAAAATGTAAGACTGTAGATGACAAAGGCATTTATAAAAGCAATCAATCTAAGAAGCAGCTA
GAGAACCTAACGAATATGTTTTACTGGACCACCAGGCAAAGAGCATCTTTTCATAGGGATGTGA
GGGAATCACTAGAGCATAAGCTACAGTGAAACACCCGGCCACAGATATACACGACTAATTTTAT
TACCATGTTTTTGGACATCGAGAAGTTCAAAAAACCACATTGTTCATACCAGAATGCAATCAAA
TAAACAGAAAGCTCCCCAGTGCAGATAAAAAATGGTTACAGAAGGGAAGAATAAGAGTTGAATA
AGTGAGTATAGCAATAACACTTCAAACCTAGACAGAAAGATTAGAATTACGGAAAAACATACCG
AGACTTAAACCGTCAAGTAACACGAGAAATGCTCCATGAAGAATAGCATATGCTGGTCCTAAAC
TCTCAGTTGCCATGTTGACAAATGCAACCCAGGAGAGGAGATCTCTGACAGTAAGCGTTCTCCC
AGTATGCAACCTGTTGAACCA
Conservation Information
Conserved circRNAs NA
PMCS 0.161444936
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020