Detail information of BGIOSGA015810_circ_igg.1


General Information
CircRNA Name BGIOSGA015810_circ_igg.1
ID in PlantcircBase osi_circ_014268
Alias Chr11:13296123_13297105(MH63RS2), Chr11:13296123_13297105(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 1556680-1557662  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTCTATAATTGCAGGTACAAGCGTGAAGAGATGAAGATACAAGCATGGGAGAACCACGAG
AAGAGAAAAGCTGAGCTGGAAATGAAGAAAATAGAGgaaattaagtcccatttgctcagacaat
gcaagcaatgcgggcggtggatgataaggagtgctacagccacagcatccatggcgagtcgaat
gggcggcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATTAAGTCCCATTTGCTCAGACAATGCAAGCAATGCGGGCGGTGGATGATAAGGAGTGCTA
CAGCCACAGCATCCATGGCGAGTCGAATGGGCGGCCGCAGCGCAAGAACAATCCGGCATCAAGG
CCGAAGCCGACGCCTTCCAAGTGGGACGACGCGCAGAAGTGGCTTGTTAGCCTGTCCAACGGCG
GAGGCGGCGGCGTTGACGGGATCCACAGCGGCAAGGTGAGGCCAAGGAACTCCAACGCCGACGA
CCGGCGCCTTCTGAGCTCGTCCTCCCAGAACGGCCGCGTGTCCTGCAGCAGCGTGGACGGGACG
CTGGAGTACAACCTGGTGGCCGCTCCCCCGACGCCACCGCAGCTGGGTGAAGCCGCCGCCGACG
ACGTGAGTGAGACGAAGAAGATCGACTACTGCATGGTCCAACCGCAGCACGGCTCCCCCGCGGC
GGTGCTCCGGTCGGTCTGCCTGCGGGACATGGGCACGGAGATGACCCCCATCGCCAGCAAGGAG
CCGTCCAGGTCCGCCACTCCGCTGCGGGCGTCCACGCCCGTGTCGCGGAGCCCCGTACCGTCGC
GGCCGTCTACGCCCGGCAGGCGGCGGTACGACGTGCCCGTGGGCGTTACCGCCGTGGTCGAGTC
CAGGACGGCCGAGCCGGTGGCGGTAGGCAGTGTTAGCGACGGCGGCGGCTTCGGCGGGGGCTGT
GCGGTGGACGAGAGTAGTAGCGGCGGGTTCGGCAACCATGCGCAGAGCACGACGACCGGGCTCG
AGTCCCGCGCCGTGGCCTGGGACGAGGCCGAGCGGGCCAAATTCACGGCGAGGTGCGAACGAAT
CTTTCTAGCATTTGACCGTTTTCTTCAGATCTGGAAGATTTGATTCGCCCATCTTTTCTATAAT
TGCAGGTACAAGCGTGAAGAGATGAAGATACAAGCATGGGAGAACCACGAGAAGAGAAAAGCTG
AGCTGGAAATGAAGAAAATAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021