Detail information of AT3G07420_circ_g.3


General Information
CircRNA Name AT3G07420_circ_g.3
ID in PlantcircBase ath_circ_020306
Alias 3:2374520-2374765
Organism Arabidpsis thaliana
Position chr3: 2374520-2374765  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07420
Parent gene annotation SYNC2_ARATH
Parent gene strand -
Alternative splicing AT3G07420_circ_g.1 AT3G07420_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07420.1:2
AT3G07420.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTGAAACAAAGACTCAATTGGCAAAAACAATACCTTAGATGCTCTGTTGTTAAAGCAACTCC
CCACTCAGGCTTGGTTTCAAATTTTGTAGTGGTTGCgctgctacagtcttcttatcatcattca
accttacgtaaaactgtttaattgctttcgggtaggtatgtacaattacaggacctttgtagat
ctcatcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGCTACAGTCTTCTTATCATCATTCAACCTTACGTAAAACTGTTTAATTGCTTTCGGGTAGG
TATGTACAATTACAGGACCTTTGTAGATCTCATCAGTCAGATAACTGCAACATTGAACGATACA
CAGAGAATTTAAATCGGATCTTGAAACAAAGACTCAATTGGCAAAAACAATACCTTAGATGCTC
TGTTGTTAAAGCAACTCCCCACTCAGGCTTGGTTTCAAATTTTGTAGTGGTTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.24485815
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020