Detail information of Os04g0455900_circ_g.4


General Information
CircRNA Name Os04g0455900_circ_g.4
ID in PlantcircBase osa_circ_024037
Alias NA
Organism Oryza sativa
Position chr4: 22808403-22808511  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0455900
Parent gene annotation Protein of unknown function DUF1692 domain containing protein. (
Os04t0455900-01);Similar to H0523F07.5 protein. (Os04t0455900-02
)
Parent gene strand -
Alternative splicing Os04g0455900_circ_g.2 Os04g0455900_circ_g.3 Os04g0455900_circ_g.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGATTTAGCATTCCATACTTTTTCCTAAGATAGTTAAAGAGTATAGGACAGACtatcatcaca
tttcctatatcatgctataatatcacgtgcaatgaaataagcaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATCATCACATTTCCTATATCATGCTATAATATCACGTGCAATGAAATAAGCAACATGATTTAG
CATTCCATACTTTTTCCTAAGATAGTTAAAGAGTATAGGACAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.098623853
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017