Detail information of BGIOSGA004650_circ_g.1


General Information
CircRNA Name BGIOSGA004650_circ_g.1
ID in PlantcircBase osi_circ_002480
Alias 1:37686693|37686912
Organism Oryza sativa ssp. indica
Position chr1: 37686693-37686912  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA004650
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA004650-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATTCCAGTGAATGGCAATTTAACTGCAGGTTTGGAATCCTACAAGCAGAAGGCAGAAAAATC
TGCCATGGATTATGGATTTCATATGGCCATTACAAAgtggaattgaccctcacactcacctgga
gatggaattcatgggaactgtaaccattgatgatttctttagtggtcatgctgcagcattggct
ggtgggac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAATTGACCCTCACACTCACCTGGAGATGGAATTCATGGGAACTGTAACCATTGATGATTT
CTTTAGTGGTCATGCTGCAGCATTGGCTGGTGGGACAACAATGCACATTGACTTCGTCATTCCA
GTGAATGGCAATTTAACTGCAGGTTTGGAATCCTACAAGCAGAAGGCAGAAAAATCTGCCATGG
ATTATGGATTTCATATGGCCATTACAAA
Conservation Information
Conserved circRNAs zma_circ_007759
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021