Detail information of Os03g0270200_circ_g.1


General Information
CircRNA Name Os03g0270200_circ_g.1
ID in PlantcircBase osa_circ_019083
Alias Os03circ09974/Os_ciR1473
Organism Oryza sativa
Position chr3: 9029898-9030072  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os03g0270200
Parent gene annotation Hypothetical conserved gene. (Os03t0270200-01);Splicing factor P
WI domain containing protein. (Os03t0270200-02);Conserved hypoth
etical protein. (Os03t0270200-03)
Parent gene strand -
Alternative splicing NA
Support reads 3/10
Tissues leaf and panicle/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0270200-03:1
Os03t0270200-01:1
Os03t0270200-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTTTGCTGGCCTGACGGTCTGCCTTTCTACGGTGCCGCTCTTCACGTCTGCGCCGTCTTTCC
TCTTTTCGCAACCTCTTCTCTTCctttcttcctagcatcagcatctgagtcagattcacgatcc
ttctcaagatctgaagccatatcaacagtttcagcatgcttcagttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 175
Transcript exons: 9029898-9030072
CTTTCTTCCTAGCATCAGCATCTGAGTCAGATTCACGATCCTTCTCAAGATCTGAAGCCATATC
AACAGTTTCAGCATGCTTCAGTTTTAGTTTGCTGGCCTGACGGTCTGCCTTTCTACGGTGCCGC
TCTTCACGTCTGCGCCGTCTTTCCTCTTTTCGCAACCTCTTCTCTTC

Genomic sequence CTTTCTTCCTAGCATCAGCATCTGAGTCAGATTCACGATCCTTCTCAAGATCTGAAGCCATATC
AACAGTTTCAGCATGCTTCAGTTTTAGTTTGCTGGCCTGACGGTCTGCCTTTCTACGGTGCCGC
TCTTCACGTCTGCGCCGTCTTTCCTCTTTTCGCAACCTCTTCTCTTC
Conservation Information
Conserved circRNAs osi_circ_004708* osi_circ_014187
PMCS 0.426575048
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015