Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018565_circ_g.1 |
ID in PlantcircBase | zma_circ_008861 |
Alias | zma_circ_0002037 |
Organism | Zea mays |
Position | chr5: 223299829-223300313 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d018565 |
Parent gene annotation |
tie-dyed2 |
Parent gene strand | + |
Alternative splicing | Zm00001d018562_circ_g.1 Zm00001d018562_circ_igg.1 Zm00001d018562_circ_g.2 Zm00001d018562_circ_g.3 Zm00001d018562_circ_g.4 Zm00001d018563_circ_ig.1 Zm00001d018565_circ_igg.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d018565_T001:3 Zm00001d018565_T002:3 Zm00001d018565_T003:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.266409725 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
223299863-223299841(+) 223300246-223299841(+) 223299943-223300252(-) |
Potential amino acid sequence |
MLGEGKPENQNHAIIFTRGEGLQTIDMNQEHYMEETLKMRNLLQEFLKKHDGVRYPSILGVREH IFTGSVSSLAWFMSNQETSFVTIGQRVLANPLRIYIG*(+) MVHVKPRNKFCDHWTTCTCQSFEDIYRIKLPGNAMLGEGKPENQNHAIIFTRGEGLQTIDMNQE HYMEETLKMRNLLQEFLKKHDGVRYPSILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLAN PLRIYIG*(+) MSMVWRPSPRVKIMAWFWFSGFPSPSIAFPGSFILYISSKDWQVHVVQWSQNLFLGLT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |