Detail information of Zm00001d033843_circ_g.1


General Information
CircRNA Name Zm00001d033843_circ_g.1
ID in PlantcircBase zma_circ_006912
Alias Zm01circ00172, zma_circ_0000529, ZmciR47
Organism Zea mays
Position chr1: 275590762-275593753  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d033843
Parent gene annotation FIP1[V]-like protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d033843_T007:5
Zm00001d033843_T004:5
Zm00001d033843_T011:5
Zm00001d033843_T002:5
Zm00001d033843_T001:5
Zm00001d033843_T003:5
Zm00001d033843_T012:4
Zm00001d033843_T010:5
Zm00001d033843_T008:5
Zm00001d033843_T005:5
Zm00001d033843_T009:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAGGGAGACCTATACAAGTTGAAACTAATTACACAGACCGGTTTCCATCTATTGATTCACGC
TCACATCGAATGCGTGAATCATATTCTGTTATTGAGtatgtacgccctggcgctcctgttgctt
cagcaggtggggtacctggtggtcctggtcagttccgccctgctggaccttcaggccctttctc
tggtcgtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 678
Transcript exons: 275590762-275590994,275592654-275592783,275592871-275592
939,275593025-275593168,275593652-275593753
TATGTACGCCCTGGCGCTCCTGTTGCTTCAGCAGGTGGGGTACCTGGTGGTCCTGGTCAGTTCC
GCCCTGCTGGACCTTCAGGCCCTTTCTCTGGTCGTGGTAGAGGTGACTGGAGGCCTGCTGCTGG
TCGAGGCATGAATAAAAGTTTTCATTCAGGTTATGGAACCGCTCCATGGGGTGGTTCAGGGCGC
GGTTTTGGTGGCGGACTAGATTTCACACTTCCTCCTCACAAGACAATATTTGATATTGATGTGG
AAACCACATTTGAGGATAAACCGTGGAAATACCCTGGTGCTGATATTTCAGACTTTTTTAACTT
TGGCCTTGATGAAGAGAAGTGGAAAGATTTTTGCAAGCAGCTGGACCAACTTCGACTAGAATCC
ACAATGCAATCTAGAATACGGGTGTATGAAAGTGGCCGCTCAGAACAGGATTATGACCCAGATT
TGCCACCAGAGCTAGCTGCTGTGACTGGTCATCCAGACATCTCTGCTGACAATCGCAATAAAAT
GGATAACGGCCATACAGATTTTAGTGCCCAAGGAAGAGGTCCGGCAAACGTGCGGACACCAGTG
ATGACAGGGAGACCTATACAAGTTGAAACTAATTACACAGACCGGTTTCCATCTATTGATTCAC
GCTCACATCGAATGCGTGAATCATATTCTGTTATTGAG

Genomic sequence TATGTACGCCCTGGCGCTCCTGTTGCTTCAGCAGGTGGGGTACCTGGTGGTCCTGGTCAGTTCC
GCCCTGCTGGACCTTCAGGCCCTTTCTCTGGTCGTGGTAGAGGTGACTGGAGGCCTGCTGCTGG
TCGAGGCATGAATAAAAGTTTTCATTCAGGTTATGGAACCGCTCCATGGGGTGGTTCAGGGCGC
GGTTTTGGTGGCGGACTAGATTTCACACTTCCTCCTCACAAGTAAGTTAACTACTACCAGCAAT
TAATATACTTCAGAGTTTGGAGTACAGCATACCATTTACTTTCAGTTGTTTTATGCTTGCTAAT
GTCTTATTGCTGTTGAAACCAAGCCTTCTATGAGCTGCAATGTGCGCCCTGTGCAGACTAGCAT
AGAGCGTATGCAGTTAGTAATGACTACATTACAATCATTATGATTATCATATACACTTACGGTG
CCTGCCATATTGTACGATAGTATGTAGCAGTGGCTGTTCATATATGTCAAAGAACCCCTGAAGA
GTGTCATTAGTTTGTATAAGGATTGTTTTGAGCTTTATATAAGGATTATTTTTCATTAAGATGG
AGGGTGACAAGCTGGAACTATTTTGGGTCGAGAGTGATGTTTTTGAATTTGATTAATTTGTTCA
TCAAACGTAATGGTTGTTGTTCACTTATTTGAAAGCCATCACACATGAACAATGTTTCTTATGC
TGGGAAAACTTGTAATCTGTTCAAAATTGTAAGTTGTTTTTCGGAAAGCTGTTTTCCTAAAAAA
TTCAAACAATCTCAATTTGGTTTAGAGGGAGTAGAATTATAGAAATGGTTTGTCCAACGAGAAA
TGACCGAAAAATTTATATTTTCACGCGGGATGGAGCAAATGATGTATCTTTTTGTCCGTGATCT
ACCAGATCTACTCAAATGACAATTTGGATAAATGAGACAGATGCATGAATTTGTGTTTTTTTGG
AACAATAGCACACGTGGCAAGAATACATGAAGCGAAGAGAGGCACGATAGCAATGAGAAGAGAG
GTAGGGGAAGTCTGAAGTTGAAATGAGAAGCGGCAATAAAAGGAGACTTGAAGGGATGGAGTAT
AACCAAAGATTTAGCTTTGAATAGGAGCGCATGGAAAATAGCTATCTATGTGCCTGAACATTGA
CGTGTGGTTTCTGTTGGGTTTCAACTCTTGCCTACCCCAACTTGCTTGGGACTAAAAGGCTTTG
TTGTTGTTGAATGATTTGCATTTCTTATGACCGTAGATTTTGATTTTCATATCCTATCATGTAA
ATTCAGGACAGAGTGCAATATCTGTTCCACACACTAATATTTATCCCTTTATCAACCTGTATCT
CACAACGTATCCTATGGCCATGAACATTGATTTTATTTAACTCAGAAGAGAGATTTTATTGTAG
AAGTTTCCAACCTTGGTCAAACAGAATTTTTACCACACAAAATTATAGAAAAAGAGAGATGCAC
ACATCATACTTACCCAGTTCCTGTGTAAATAAGAAACATCTATAGTTTGAATACTGTGTATTTA
AGAAATCATGCATGGATATGGATGCTAAATAAAACTATTAAACATTCTTACCACTGAGCACCGT
ATGATGGGGATGTGCTTGCTGGATTATAAATGCACTTTAGATTCTAAACTCTAAAGCATGTAGA
ATCACAAATAGCACTGTACTGGATGCGCATGCCTCATTTTCTGGTCTAGTATGAGATTAAGAGT
TATGGGCATCTATGATGTTCTTTCATTTGCAATCAGAGAACAATCCTAGTTTAGACTCTTTCAC
CATTTTCTTCGTCTAAATATTTTTTTTGGATTATGGATGATTTTAGTTTGTGCTCATTCATTAT
TAATTTATAGTAAAGACTGATTATTATTTGAACTAGGACAATATTTGATATTGATGTGGAAACC
ACATTTGAGGATAAACCGTGGAAATACCCTGGTGCTGATATTTCAGACTTTTTTAACTTTGGCC
TTGATGAAGAGAAGTGGAAAGATTTTTGCAAGCAGCTGGTGAGTCCATTTCTTACATTTAGTAC
TGCATATAGTTTGTTTACTTTATATGCCTAATAAATTAAACGATAATTCTTTTATTGCCAGGAC
CAACTTCGACTAGAATCCACAATGCAATCTAGAATACGGGTGTATGAAAGTGGCCGCTCAGAAC
AGGTTTATTATAATCCAATATTCCCATTATGGACAACAGTATCCTACTCTACCTGTAGCAATGA
TAATATATTTGATCTGCATCCAGGATTATGACCCAGATTTGCCACCAGAGCTAGCTGCTGTGAC
TGGTCATCCAGACATCTCTGCTGACAATCGCAATAAAATGGATAACGGCCATACAGATTTTAGT
GCCCAAGGAAGAGGTCCGGCAAACGTGCGGACACCAGTGGTATTGAGCTTTTCTCCATCTCTAG
AATTTCACATCCGATTCATGTTTACTTTTGAATATTTTTTTTGTTGTGGTATGGTTTCTCACAT
TATTGGCTTATGGGTGTAAGATAGACCATCACTCACGTTTATTGACTTATCATGTTGTCTGTAT
GCCGCATATTGGTGTTCCAGACAATCTGTCAATAGTTCTTTTGTGGTTATTAGCAACAGAGCAA
ACACAAATTTATACCATTAACAACCATCTATCTATTTGTTGTTTTTTCTGTTTAACTAATACCA
GCACGTGGGCTTGATCCTATAAAACCAATACAGATTCCGTAGCCTTTTCATCCCTTGGAGGCTT
GGCCACGCGTGGGTGTTAATGTTTGATCCTTTGAGTATTTTTCTTGTAGCTTTGGTCACACATG
CTGTTTATTTTTCTTCAATTTTCATTATTCTGTGCCAACATAGTTACATGTAGTGATGTGAGTT
TGCTTTTCAGATGACAGGGAGACCTATACAAGTTGAAACTAATTACACAGACCGGTTTCCATCT
ATTGATTCACGCTCACATCGAATGCGTGAATCATATTCTGTTATTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.067015182
Functional Information
Coding potential Y
Potential coding position 275590898-275593750(+)
275590938-275593748(-)
Potential amino acid sequence MNKSFHSGYGTAPWGGSGRGFGGGLDFTLPPHKTIFDIDVETTFEDKPWKYPGADISDFFNFGL
DEEKWKDFCKQLDQLRLESTMQSRIRVYESGRSEQDYDPDLPPELAAVTGHPDISADNRNKMDN
GHTDFSAQGRGPANVRTPVMTGRPIQVETNYTDRFPSIDSRSHRMRESYSVIEYVRPGAPVASA
GGVPGGPGQFRPAGPSGPFSGRGRGDWRPAAGRGMNKSFHSGYGTAPWGGSGRGFGGGLDFTLP
PHKTIFDIDVETTFEDKPWKYPGADISDFFNFGLDEEKWKDFCKQLDQLRLESTMQSRIRVYES
GRSEQDYDPDLPPELAAVTGHPDISADNRNKMDNGHTDFSAQGRGPANVRTPVMTGRPIQVETN
YTDRFPSIDSRSHRMRESYSVIEYVRPGAPVASAGGVPGGPGQFRPAGPSGPFSGRGRGDWRPA
AGRGMNKSFHSGYGTAPWGGSGRGFGGGLDFTLPPHKTIFDIDVETTFEDKPWKYPGADISDFF
NFGLDEEKWKDFCKQLDQLRLESTMQSRIRVYESGRSEQDYDPDLPPELAAVTGHPDISADNRN
KMDNGHTDFSAQGRGPANVRTPVMTGRPIQVETNYTDRFPSIDSRSHRMRESYSVIEYVRPGAP
VASAGGVPGGPGQFRPAGPSGPFSGRGRGDWRPAAGRGMNKSFHSGYGTAPWGGSGRGFGGGLD
FTLPPHKTIFDIDVETTFEDKPWKYPGADISDFFNFGLDEEKWKDFCKQLDQLRLESTMQSRIR
VYESGRSEQDYDPDLPPELAAVTGHPDISADNRNKMDNGHTDFSAQGRGPANVRTPVMTGRPIQ
VETNYTDRFPSIDSRSHRMRESYSVIE(+)
MERFHNLNENFYSCLDQQQASSHLYHDQRKGLKVQQGGTDQDHQVPHLLKQQERQGVHTQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress