Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d033843_circ_g.1 |
ID in PlantcircBase | zma_circ_006912 |
Alias | Zm01circ00172, zma_circ_0000529, ZmciR47 |
Organism | Zea mays |
Position | chr1: 275590762-275593753 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d033843 |
Parent gene annotation |
FIP1[V]-like protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d033843_T007:5 Zm00001d033843_T004:5 Zm00001d033843_T011:5 Zm00001d033843_T002:5 Zm00001d033843_T001:5 Zm00001d033843_T003:5 Zm00001d033843_T012:4 Zm00001d033843_T010:5 Zm00001d033843_T008:5 Zm00001d033843_T005:5 Zm00001d033843_T009:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.067015182 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
275590898-275593750(+) 275590938-275593748(-) |
Potential amino acid sequence |
MNKSFHSGYGTAPWGGSGRGFGGGLDFTLPPHKTIFDIDVETTFEDKPWKYPGADISDFFNFGL DEEKWKDFCKQLDQLRLESTMQSRIRVYESGRSEQDYDPDLPPELAAVTGHPDISADNRNKMDN GHTDFSAQGRGPANVRTPVMTGRPIQVETNYTDRFPSIDSRSHRMRESYSVIEYVRPGAPVASA GGVPGGPGQFRPAGPSGPFSGRGRGDWRPAAGRGMNKSFHSGYGTAPWGGSGRGFGGGLDFTLP PHKTIFDIDVETTFEDKPWKYPGADISDFFNFGLDEEKWKDFCKQLDQLRLESTMQSRIRVYES GRSEQDYDPDLPPELAAVTGHPDISADNRNKMDNGHTDFSAQGRGPANVRTPVMTGRPIQVETN YTDRFPSIDSRSHRMRESYSVIEYVRPGAPVASAGGVPGGPGQFRPAGPSGPFSGRGRGDWRPA AGRGMNKSFHSGYGTAPWGGSGRGFGGGLDFTLPPHKTIFDIDVETTFEDKPWKYPGADISDFF NFGLDEEKWKDFCKQLDQLRLESTMQSRIRVYESGRSEQDYDPDLPPELAAVTGHPDISADNRN KMDNGHTDFSAQGRGPANVRTPVMTGRPIQVETNYTDRFPSIDSRSHRMRESYSVIEYVRPGAP VASAGGVPGGPGQFRPAGPSGPFSGRGRGDWRPAAGRGMNKSFHSGYGTAPWGGSGRGFGGGLD FTLPPHKTIFDIDVETTFEDKPWKYPGADISDFFNFGLDEEKWKDFCKQLDQLRLESTMQSRIR VYESGRSEQDYDPDLPPELAAVTGHPDISADNRNKMDNGHTDFSAQGRGPANVRTPVMTGRPIQ VETNYTDRFPSIDSRSHRMRESYSVIE(+) MERFHNLNENFYSCLDQQQASSHLYHDQRKGLKVQQGGTDQDHQVPHLLKQQERQGVHTQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |