Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d033843_circ_g.1 |
| ID in PlantcircBase | zma_circ_006912 |
| Alias | Zm01circ00172, zma_circ_0000529, ZmciR47 |
| Organism | Zea mays |
| Position | chr1: 275590762-275593753 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI2, find_circ |
| Parent gene | Zm00001d033843 |
| Parent gene annotation |
FIP1[V]-like protein |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, endosperm, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d033843_T007:5 Zm00001d033843_T004:5 Zm00001d033843_T011:5 Zm00001d033843_T002:5 Zm00001d033843_T001:5 Zm00001d033843_T003:5 Zm00001d033843_T012:4 Zm00001d033843_T010:5 Zm00001d033843_T008:5 Zm00001d033843_T005:5 Zm00001d033843_T009:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.067015182 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
275590898-275593750(+) 275590938-275593748(-) |
| Potential amino acid sequence |
MNKSFHSGYGTAPWGGSGRGFGGGLDFTLPPHKTIFDIDVETTFEDKPWKYPGADISDFFNFGL DEEKWKDFCKQLDQLRLESTMQSRIRVYESGRSEQDYDPDLPPELAAVTGHPDISADNRNKMDN GHTDFSAQGRGPANVRTPVMTGRPIQVETNYTDRFPSIDSRSHRMRESYSVIEYVRPGAPVASA GGVPGGPGQFRPAGPSGPFSGRGRGDWRPAAGRGMNKSFHSGYGTAPWGGSGRGFGGGLDFTLP PHKTIFDIDVETTFEDKPWKYPGADISDFFNFGLDEEKWKDFCKQLDQLRLESTMQSRIRVYES GRSEQDYDPDLPPELAAVTGHPDISADNRNKMDNGHTDFSAQGRGPANVRTPVMTGRPIQVETN YTDRFPSIDSRSHRMRESYSVIEYVRPGAPVASAGGVPGGPGQFRPAGPSGPFSGRGRGDWRPA AGRGMNKSFHSGYGTAPWGGSGRGFGGGLDFTLPPHKTIFDIDVETTFEDKPWKYPGADISDFF NFGLDEEKWKDFCKQLDQLRLESTMQSRIRVYESGRSEQDYDPDLPPELAAVTGHPDISADNRN KMDNGHTDFSAQGRGPANVRTPVMTGRPIQVETNYTDRFPSIDSRSHRMRESYSVIEYVRPGAP VASAGGVPGGPGQFRPAGPSGPFSGRGRGDWRPAAGRGMNKSFHSGYGTAPWGGSGRGFGGGLD FTLPPHKTIFDIDVETTFEDKPWKYPGADISDFFNFGLDEEKWKDFCKQLDQLRLESTMQSRIR VYESGRSEQDYDPDLPPELAAVTGHPDISADNRNKMDNGHTDFSAQGRGPANVRTPVMTGRPIQ VETNYTDRFPSIDSRSHRMRESYSVIE(+) MERFHNLNENFYSCLDQQQASSHLYHDQRKGLKVQQGGTDQDHQVPHLLKQQERQGVHTQ*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |