Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G28520_circ_g.17 |
ID in PlantcircBase | ath_circ_033345 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr4: 14089271-14089485 JBrowse» |
Reference genome | TAIR10.38 |
Type | u-circRNA |
Identification method | SMALT, Segemehl |
Parent gene | AT4G28520 |
Parent gene annotation |
12S seed storage protein CRC |
Parent gene strand | + |
Alternative splicing | AT4G28520_circ_g.1 AT4G28520_circ_g.2 AT4G28520_circ_g.3 AT4G28520_circ_g.4 AT4G28520_circ_g.5 AT4G28520_circ_g.6 AT4G28520_circ_g.7 AT4G28520_circ_g.8 AT4G28520_circ_g.9 AT4G28520_circ_g.10 AT4G28520_circ_g.11 AT4G28520_circ_g.12 AT4G28520_circ_g.13 AT4G28520_circ_g.14 AT4G28520_circ_g.15 AT4G28520_circ_g.16 |
Support reads | 3 |
Tissues | siliques and seeds |
Exon boundary | No-No |
Splicing signals | GT-AG |
Number of exons covered | AT4G28520.3:1 AT4G28520.1:1 AT4G28520.5:1 AT4G28520.4:1 AT4G28520.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.179066783 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015 |