Detail information of BGIOSGA010755_circ_igg.4


General Information
CircRNA Name BGIOSGA010755_circ_igg.4
ID in PlantcircBase osi_circ_004811
Alias 3:14408713|14411666
Organism Oryza sativa ssp. indica
Position chr3: 14408713-14411666  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA010755_circ_g.1 BGIOSGA010755_circ_g.2 BGIOSGA010755_circ_g.3 BGIOSGA010755_circ_g.4 BGIOSGA010755_circ_g.5 BGIOSGA010755_circ_g.6 BGIOSGA010755_circ_igg.1 BGIOSGA010755_circ_igg.2 BGIOSGA010755_circ_g.3 BGIOSGA010755_circ_igg.5 BGIOSGA010755_circ_igg.6 BGIOSGA010755_circ_igg.7 BGIOSGA010755_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAATCTTTGATAAGCGAATGCTGCCCCGGCTGAACACTACACCAAGTAGAGGAAAATGGCGA
TGTGCTTGATTTCTCCTCTGGAAGTTGCTCAAATATcttctctttgtgatcatcaggatgtaca
tgagaaccaataataaaagcacctgctgggaaatattgaagcttgctcttgagagcacgatagg
aatcatta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCTTTGTGATCATCAGGATGTACATGAGAACCAATAATAAAAGCACCTGCTGGGAAATAT
TGAAGCTTGCTCTTGAGAGCACGATAGGAATCATTATTCCCACAAATTCTTTCTGTGTCCTTCA
AAAATAAGACTAGAGGACCATGCTCGATTTCTTCAGAGATAAACTATGGAGCAAACAAAGTTAG
TAAAAGGAAGCAAAATATCATTTACATAAATCATGACTAAAATATACAGATGCACGAACCTGAA
TAATGACATCAAATGGGTGTTTCGATCTAATTTCCCATCCTGGAGCATCGAGGCATAAAGAATC
AACTGAAAGAATAGTAGGTAAGAAAGTCATATCAAGCATGAATCAATTGAAGGGTAGCAGTAAA
CATAATAGTTAAAAAGAAGGAGAACAATGTAATTTACTGGCAGTTCTTCAAAACTTATCAACAG
AGCGAGGAATCACCTGAACAAAATAAACCATGATCAACTTCACAATTGCCTCCTAGATCAATAC
CTCCCGGAATTTGTTCATCAAATCTTACTCCAACCTTTGATGATCTATTCTCTTCGAAAGGAAG
ACATATTTCACCTTGTGAACCAAAATCTGGAGGACTACAGAGTAAACAATTAAACATCAGCCAG
CAGCAATATGTAAGAGCACATTATAACAACCATAAGAAGTTTATTTCCTTAGAGCAGACTAACT
GCCACACATCTTTGCAAAACTAATGAAGCTTTTTTTAGACAATAGGCCACATCTCAGGAAGCTT
CACAAGGATAAATCATGCAAAAGTGAGAACCCATTTATTTTGTGTTGTTTTACAAAGAAACAGG
CAGCTAAGACAAGCTTATGACTACAAATATTATGAAGTACATAGAGAATAAATAAATATTAAAA
AAATTATCATACCTTTCTCCATCAAGGATAATACCTGTTGACTGTAACGAACCAATGTACCGCA
CTCTATCACCTGAAAAAAAAAGAACATCTGAAGATCAACAAATGACCCACACTCGCTTGACCAG
TTTGACAAGAATAATAAGTTCATTATACTCGCATTACTACTAACGCTCAGCCATAAACTTGCAA
TACAACAATGTCGATGGCCTATCTTTGGAAAGAACATAACTAGGGTTGTGAGTTGAAACTCAGT
ACAAGGCAACAATGTATTATGTATGTCCTTACCCTTTTTGTATGAATCTGATTCCTTGGTAGTC
TTCCCCTGAAATAAGAAAAATAATGCTCAGAGTCTTTATTACTTAAATTCATACCATACCAAAA
CAAGTGTTTACAATTTTTTTGCTCAAAAAGGCCAGCAAGTAAGAACACCAACATTGGTTGAATG
GCACAGGTACAACAAAAAGAAATAACAACAATAATTCCAATAAGAATACAGATAAAAAGTTCAT
AAAAAAAATTCTTGGCTAACATAAATGAAAAAAAAGGTATAATTGCTAAGAAGCTTACACCAAA
TAGCATGGAAGAGTCTATGGTGAGCAACCTAGCACCAAAGTGTTTTGCAAGTGCCTTAACCAGA
TATTGTTGGTAGATATCGGTTCCTGTAAAAACATATGTTACCACACTTTACACATAGTAAAATT
AAATTAATCATTGGAAAAAAATAGTAGCATTATACAATACAATAACACCAAGCCTACAGAATGC
ATACAGTATGTACCTGCCGGACCAGACAGCAGTACTCGCTGACTAAGAGAAGAAATATCTTTTG
TGAACTTGATATAGTCCTTGCAGTGCAAATTTACATATGCTGATGACTGGAGAGCAGATTTGGT
GTTCTCACTACATAAACAAAAGAGTTATTAGAATATAGTTCATGACAACTATGCGTTCACCGTT
TAGAAAAGAAATGGCTTGAGGAACTAGAAGGAAAGTATTTTTTTAAAAAAAAAATAGAAGGAAC
ATAAAATAGTTGATATAGCCCAACGTCCCCAAGGCCTAGGTGTGTCTACTACTCTACTGTAGCC
CATAGTGCTGCAAGGGCAGCGAGGAGTCAACTCAATAGTATAGATTTATTCATACTGGGAGACC
ATTTGGAATAAAGAAGTGATTCTATGGAAGCATAGATAACATAAATCTAATGATTTTATTCAGT
CACTAAATCCATATATTGCTGGACTAATTGTATGTCAGAATTTACAAAAAGAAATTACAAAAGA
AACATTTGAGAATAAATTGGAAGGAACAAGGAAAAAAACTAATATCAAGCATTTACATCTGCTG
CAAATTACAGATAGAAGAATAAGACTTCCTAGAAGAAATAACAGCACCATATGTCTGCAAACTA
ATATCATTTAGATGAGTGTGGAATACAATGATGAAGCTTATCAAGAGTTCCAAACTAAGATGCA
CAGAGACCACAGAACTTACCAACCATGGCATTTCAAGGCCAAAGAACAAATACTCAATCTCATA
AGTATTAACAAAATTTATTACAACAGTTTACAGAGATATCCTAAGAACAAAAATAGCAGAATTA
TAAGCCATGAGACAGGCAGCTAAGTACAGTTTACCTTAGATAATATGGACAGCTATCAAATGTC
TCGGAGATTTCACTAGGATCAATAGTTGCATTTTTCAAATCCTCCTCCAATAATTGACACCAAG
CAAATGGTGTGTTTTCTTCAGAGTTAAACTGGTCCTCCATTGTTTTACATAGACTACTGACCAG
ATCTGGATCCGATGATGATCCTGCAATAATGCTTACATTAGCATCTTTTTCTATCAGGTAAAGT
GCAATTTCAAATGAAATACATTACCAACAGGCATCAAAGGAGGTCGACTCTTTCCAAAGTAAAA
GGATGTTACTTTGGCCTCCTTAGATGAAAAAATATCCTTAAAATCTTTGATAAGCGAATGCTGC
CCCGGCTGAACACTACACCAAGTAGAGGAAAATGGCGATGTGCTTGATTTCTCCTCTGGAAGTT
GCTCAAATAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021