Detail information of BGIOSGA013930_circ_ig.1


General Information
CircRNA Name BGIOSGA013930_circ_ig.1
ID in PlantcircBase osi_circ_013888
Alias Chr03:38526145_38528437(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 39929113-39931406  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA013930_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATAGGATTTGCAGAAAAAACAGAGGAATGAATGTATAGCACCTGCAGATTGGTGTATTCTCA
AATGATCCTACAGGTAAATCACAGGAGGCCTCTCATcatgatcttgttaacgatgttggtgtgg
agcccccaatattggtatccatgtcttaatgtgtgtaagccagctaaacaatcctcacagcatg
cttcacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGATCTTGTTAACGATGTTGGTGTGGAGCCCCCAATATTGGTATCCATGTCTTAATGTGTGT
AAGCCAGCTAAACAATCCTCACAGCATGCTTCACATAAAGAGTAATAAAAGGTTAGCTACATTT
GAAGTGTTTTGCCACACTGAGTTCCAAATCAATTTTTGGCCATGTACACATAAAATTTGCTTTT
CCATATATGTATGAGGGCCAGATAAAATAATCAAGTGTCTCAACAGCAGTATGTTTTTTAGAGT
ATGATTAACATTATGGTTTTTAGAGCATGATAATTGCAACAATTAAATAATTGCCAACTTTTTG
GGCTGCATGAGTGTCTAGACTGAATCCAATCTTAAGCAAAAGGGTAAGCAATTTTCCCTTGCTA
AAGTAAAATTTTTCCATTAGAAATTACTGAGGGAATCGATTTCATAATTGCCTGCAAATTGCTT
TAAAAATAAAAAGGGTGGTCAGATGCCATTCCTTTTATGAACATTTCCTTTTTTTTCTCCTTCC
CTGATAGCACATATGTGTTTTCTTTATGAGATTCCCTTGAAAATGAGAACGTAAAATGATCTAG
ATATAACCAAAATACCCATCCAAACATGCCAAAAAGAAAATGAAATATTAAAGATTCCTAAGCT
CGAAGAATCTACTCACTGATAACGTAGGATAAAAAAAAAACTCACAGGTGTAACTATAATGGTA
TATCAGTGACCAATCCCAGAGAAAAGAGACGTGAACTTCACCCACGATATACATGTATGGATGC
ACCTTAGCATAGCATAGTGAATCAGTACAGGTTGTGCTTAGGTATTTACTGAAAATCCTTAATA
TTATCAAGCAGATATACATGTTGTTACAAGCATTTCTCTTAGCAATTCAGTGTACGAACTGTAG
TTCACATCCTTGTTCATTTCGTTATATCAAGCAAGAAATTTGTGAACGAAAAAGGAAGTTAACG
CTATTTTATAAATTCAGATAAATGATCGATGTGACATGTTCAGAGTAACAGTTTACTCTAGTTT
GATACACTTCATTGAAAAAAAAAAGATCCAATGATCATGAAGACAATAACCAATTTAAAATCTT
ACTGCTTGCACATAATTTTACAAGGAAAATAAGAGCAATTCTATATTATCAGGAAATGGATTGA
ATACCAATGGCATTAATATGACACATAAACTGTTGCAAGCTTCAGTTATGATGTCAGTAATAGA
AGGGAATGAACCTTCAGGATCAGGGCTCTCAGGATGAGCAAGGAAAAACACCGTCTAGGCAAGC
TTGTTCAAGCACTCCTTAATCAGCACGATCAACAAGTTGCATTTTTTTCTAAGACTTTAGTCCA
ATTGAGGATAGATCAAGAAGAGGAAGGAGCTCGCATTGTACCAGGGCAGAGAGGACTGCCGACG
CTGATATTGTAGGACTGACTGTGGCGCTCGGAATCATTTGTAATCATAAGCAAATTAATAAGCT
ACGTGGATGTGGTTGTTGTAATTTATTTGGAGTAATCAGTTTAATTTAATCACAGACACATTGT
GAAATTACACGTTTTTTGGATGCCCTATAGCAAATTTTGCTATCTAGAATAGAAACTGAATGAC
TGAGACGTGAATCCTAACAGCCCACACAACTCCCTTGTTACGAAGTATTCGGCACATGACATCA
GCACAAAGAGAAATCTGCTTGTATGTCCAAGGTACTGTAGGTTCAAAGAAAGAAATTCTTGACT
GGATGTCTACAATTTAACCCTTTGCATGGTGCAGTAGAAATGTTTATAGACCATTTAGCGAAGA
TTGATCCATGCAGGAGACATTTGCACTATTTGTAAGGGGTAATCATGATGGAAGGAAATTACCT
TTACCAAACAGAAATTTAGTAGAATCAGCCAAAAATCTCCTTGATTGTGCAGTAAACAATAGCA
ATTGGCATGGTGTCCAGTCAGCTTTGCTTCGACAATCTGAACTTTTTTTTCCTACATATTAAAT
AATTTGATATCAAAGGTTAAGTCAGTTTGCGAGATATAAGTTTTTTTTTAAAAAAAAAAAAGAA
GTGTACCATCACTTCAGAGACAACTGTGATAGTTAATCTACATACAAAATTAAGTTTGAGGGAC
ACAGAACTGAGTATGAATGCTTAGCACTTCGATCAGACTCCACAACACACTATACACACTTAAG
TTGACAGAATTGCATCTCCTATAGGATTTGCAGAAAAAACAGAGGAATGAATGTATAGCACCTG
CAGATTGGTGTATTCTCAAATGATCCTACAGGTAAATCACAGGAGGCCTCTCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021