Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G04850_circ_g.12 |
ID in PlantcircBase | ath_circ_000723 |
Alias | At_ciR3951 |
Organism | Arabidpsis thaliana |
Position | chr1: 1367147-1367934 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | AT1G04850 |
Parent gene annotation |
F13M7.16 protein |
Parent gene strand | - |
Alternative splicing | AT1G04850_circ_g.2 AT1G04850_circ_g.3 AT1G04850_circ_g.4 AT1G04850_circ_g.5 AT1G04850_circ_g.6 AT1G04850_circ_g.7 AT1G04850_circ_g.8 AT1G04850_circ_g.9 AT1G04850_circ_g.10 AT1G04850_circ_g.11 AT1G04850_circ_g.13 |
Support reads | 2/1 |
Tissues | leaf/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G04850.2:3 AT1G04850.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.216980743 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1367836-1367149(-) |
Potential amino acid sequence |
MEIDDNASGSGEAAEEMVVPDVDNNILEELEAMGFPKARATRALHYSGNASLEAAVNWVVEHEN DPDVDEMPKESDLHTKRTGHTEFVDKTLETIKPISLEAPKVAMEIDDNASGSGEAAEEMVVPDV DNNILEELEAMGFPKARATRALHYSGNASLEAAVNWVVEHENDPDVDEMPKESDLHTKRTGHTE FVDKTLETIKPISLEAPKVAMEIDDNASGSGEAAEEMVVPDVDNNILEELEAMGFPKARATRAL HYSGNASLEAAVNWVVEHENDPDVDEMPKESDLHTKRTGHTEFVDKTLETIKPISLEAPKVAME IDDNASGSGEAAEEMVVPDVDNNILEELEAMGFPKARATRALHYSGNASLEAAVNWVVEHENDP DVDEMPK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |