Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G13570_circ_g.2 |
ID in PlantcircBase | ath_circ_002413 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 4643130-4643930 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder, circRNA_finder |
Parent gene | AT1G13570 |
Parent gene annotation |
F-box/FBD/LRR-repeat protein At1g13570 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 9 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G13570.2:1 AT1G13570.1:1 AT1G13570.3:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.127342614 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4643931-4643132(-) |
Potential amino acid sequence |
MGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVV ETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGEFRVPAC LFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDS LVLSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMHEDVTDFEQSSDYNLVKFLGGVPLL EKLVGYIYFTKMGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEK CVSPSNDRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLK LGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPL LEFLSLSYFDSLVLSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMHEDVTDFEQSSDYN LVKFLGGVPLLEKLVGYIYFTKMGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKW STLTDLVFDEKCVSPSNDRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFL SRNGIKELVLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPE VIESLISGCPLLEFLSLSYFDSLVLSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMHED VTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKMGESPDFISDLPQSIIENILTRLSIRDAIRT SVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQC RPDIDQWLLFLSRNGIKELVLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKS LNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLVLSISAPNLMYLYLDGEFKDIFLENTPKLV AISVSMYMHEDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |